F29540

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29540

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29540

Determination of introduced cDNA(s)

  • RAFL09-89-F19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-89-F19 - Resource: pda17895

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-89-F19 - full reading 
    GATTACAAAC AACTTACAGA ACTATTCTAA CTCTCTTACG GAAGAAGAAT 
    CAAAGAGAAT CAGATTAGAG TGTGAGTTTT TAGAAGTTAC TAAATGGAGG 
    GTAAAGGACG AGTTGGCTCA TCTTCTTCTA CTTCTTCTTC TTTTACAGCC 
    GAACTCTTCG GTTCCAAAGA TCCTTCGCCA CCATCTTCAT CCTCCGGCAT 
    CTTCTCCACC ATGTTCCCTC ATCCCTCCAA GGGTTCTGCA AGAGATGGTT 
    CAAACTCCAA ACATGGCTCA CAAGCTCAAC GTAGAGAATC TTTAAATGCT 
    CAAGAAGACA GAGTTGAGCC ATGTCATCTA AGCTCTTCTC TTTACTACGG 
    TGGTCAAGAC GTATACGCTC GATCCACCAC CAACCAAACT TACCCTCCAG 
    TTAAAAATGA CCGTAGAAGA AGCGGAGAAG ACGACGCTAA TGGACAGAAC 
    CCGCAAGATG TTTCAAGAGG AAACTGGTGG CAAGGTTCTC TTTATTACTA 
    AAGAACCACT TCCTTTAGTT TCTTTGTAAA TCTCTCCAGG AACACCTGAA 
    GCTCAAGCCA AGTACTAATA TCTACTTAAC CAAGACTTTG TATAAATAAG 
    TTTATGCAGA AAAAAAAAGT TATTAGGAGA TTTCTAGGTT AAGTAATAAT 
    ATCGAAGAAT TCTCCTAGTA GTAGTGTCTT AAATAGATTT CTCTAGTACT 
    TGTTATAATC AACTGTAACA ATATTTACTC TGTTTTTCTC TGTCTCGTGC 
    CAACAAAGTG ATGAAATCAT TAGCCTTTTT TACCATAAAA A

    Gene models with high sequence identity

    1. AT5G59080.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative str...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G59080.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR