F29549

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29549

Determination of introduced cDNA(s)

RAFL05-16-J05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-J05 - Resource: pda03024

full reading [+] show sequence

CCCGGTAAAT TTTGCCGGCG AAGATTGAAA CTTTTCCAAA CGATGCAAGC 
AACGGCGAAT CTTCCGACGA TATGGAATCT GTCGCTTCGT GGGTCATCCT 
CTAAAGTCCA TATAGTGAAC CCTAGGCATC GAAAGTCTCA CGCGCTTCAT 
TGTTTGAGAT CAGAAGGGCA TGAAGAGTTT GACAATTCTC AGAAAAGTCT 
TGGACAATCT TCTATTACAA AAGAAGCAAA ACATAAGGAC ATATGGAACC 
TCTTTAGAGA AGCTCAAAAA AATATAATGA TCTTAAACAA ACAACGCCTA 
GCTGCAGTTG ACGAGTTAGA ACAGCTAAAG AAAGATAAAG AGGAATTGTT 
AGAGAGGATA AACCAATTGG AGGCAGAAAG TCAGATTGTA ATCAAGAAAG 
ATAAGTCGTC TCTATTCTGG GAGTTGCTTC TCCGTATTGA TTCTATGGTT 
ATCAATGGAC TAGTTAACAT TGAAGAAGCT TCATCCATGA GAAAGCTGGT 
TAAAGAGCAT GAAGCGAACA TCTCTGTATT TCCTCTTGAT GTCCTGCAAC 
AAGGAGATGC CGAAATTCTA GCAGAACTTA GACGGTTCAC AAATAAAGGC 
AAAAGGAATG GTCTCCATGT GATTCATATT TGCACCGAAA TGGCTCCATT 
AGTTTCTGTT GAACCTTTGG CCTCATATAT AACAGGATTG TCTTGTGCAC 
TCCAAGAAGA GGGTTACATG GTTGAAGTTA TATTGCCAAA ATATTCTACA 
CTTGATTTGG ACGAAATTGA AGGGCTTCGT GAAATCGAAG CCGATGCATA 
TTCTTATTTT GATGGCCAGC TGCATGCAAA CCGAATATGG AACGGAGTTG 
TCTCTGGAAT AGGAGTGACA CTTATTCAAC CAGTGTATTA CTCGTCAATG 
TTTAGCCGTG ATAAAGTATA CGGGTATCAG GACGATTTTG ATAGATTTGC 
ATACTTCTCT CGTGCTTCAT TGGATTACAT TGCAAAATCT GGAAAGCAGC 
CTGATGTTTT ACACATTCAC AACTGGCAAA CTGCAATAGT TGGACCGTTG 
TTTTGGGATG TTTTTGTTAA TCAGGGACTT GAAGGTACTA GAATACTCTT 
GACATGCCAA GACTTTGACA AGGGTCTTGT ACCTCCTGAA AAATTGGAGC 
TATGTGGGCT CGATCCAGCT GAACTTCACC GTCTTGATCG CTTACAAGAT 
AACACAAATC CACATTTTGT TAATATTTTG AAGGGCGGTG TTGTCTACTC 
CAACAAAGTT GTAATAATGT CATCCTCACA TAGCTCAATC CCTGGTCTCG 
AACCAACTTT AGCTATCCAC AAGGACAAGT TGTTTTTTGC TCCCTTTGGA 
ATGGACAACT CAATGGAGAA AGACTTGTGT TGTGACCTTC ACGTCTCTGC 
ATATACTTCC ATTAAGAACC TATGAAAATA CACAATGATG AACAAGATGA 
ATGATTATTT ATCATATTTT CACATTAAAA AAAAAAATTG TGAC

Gene models with high sequence identity

AT5G65685.1 [+] show detail - UDP-Glycosyltransferase superfamily protein
E-value: 0; Score: 99.93

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
HMMPfam	Starch synthase, catalytic domain	8.7e-40
superfamily	UDP-Glycosyltransferase/glycogen phosphorylas	6.6e-20

See the detailed result >

AT5G65685.1

Model type: Protein coding
Short Description: UDP-Glycosyltransferase superfamily protein
Computational Description: UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: starch synthase activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Starch synthase, catalytic domain (InterPro:IPR013534); BEST Arabidopsis thaliana protein match is: starch synthase 4 (TAIR:AT4G18240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR