F29618

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Shape::zigzag) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29618

Determination of introduced cDNA(s)

RAFL04-16-M03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-M03 - Resource: pda07183

full reading [+] show sequence

GGGATCCAAT AGAGAAAACC ATTACACGAG AAAGGAAAAA AATGGTGAAT 
CCTTCTTCAC CTGGAATTGC CATACTCGGA GCTGGGATCT TCGTCAAAAC 
TCAATACATT CCGAGATTAG CTGAGATCTC CGATCTCGTC GACCTGAAAG 
CGATTTGGAG CCGTACTGAG GAATCTGCAA AAGGAGCTGT GGAGATAGCA 
AGAAAGCATT TTCCTGAAGT GAAGTGCAAA TGGGGAGATG AGGGTCTCAA 
TGAGATCATT CAAGACAGTT CAATAGTTGG TGTTGCTGTA GTTGTAGCTG 
CAGAAACCAT GGTTGAATTG TCACTGAAGA TGCTCAAGGC AGGAAAGCAC 
GTCCTTCAAG AGAAGCCAGC TGCTGCTTCA ATCAGTGAGA TAGAAACTGC 
AATGTCAAGC TATAGAAATA TTTCTGCTGA TTCCCCATGC CGTCCAATTT 
GGGCTGTGGC TGAAAATTAT CGTTTTGAGC CAGCTTTTGT TGAGTTGAAG 
AAACTGATAG CAGAAATTGG AGATATGATG AACGTCCAGC TTATTATTGA 
GGGATCAATG AACAGTTCTA ATCCTTATTT CTCAAGCTCC TGGAGGCGAA 
ATTTGAGTGG TGGTTTCATC TTGGATATGG GTGTACATTA CATTGCAGGA 
TTAAGAATGC TTGTTGGATG TGAGGTAACA TCAGTCTCAG CCACCACTAC 
CCATGTGGAT AAGACTTTAC CTGGACCAGA CAATATAACA TCAAACTTTC 
AGCTCGAGAA CGGATGCTCT GGGGTTTTTG TTATGGTTGT GTCTTCAAGG 
TCTCCAAAGA TACTATGGAG AATCGTAGGA CTAAAGGGCA CTGTTCAACT 
AGAGCGTGGA GTGGAAGGTG GCCGACATGG TTACATGGCC ACGATTTACG 
GGGAAGGAGG GACATCAAGG ACCATCTTTT ACCCATTCAG CGGAGTGACT 
GAAGAGTTAA AAGCGTTCTT CAATGATATT TCAGAAACTT CAAAGGAGCA 
AGAGCCTCGT CTATCATATG TGGAAGGTGC TCGTGACGTT GCAGTTCTTG 
AAGCAATGCT CGAGTCTGGT GCGAAAAATG GAGCCGTAGT CCCTGTCAAC 
AAATTCTAGC TTTGAACCTT TATTAAGTAC GATTAGACTC CAACATACCG 
CTAAAGCTTT TGCTGGAATA AAAATTGTTA CCGTTCAACA TGATAATACA 
AACTCTATAA TATTTCTTTT GTAAC

Gene models with high sequence identity

AT3G20790.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	NAD(P)-binding domain	0.000000000016
Gene3D	no description	4.5e-16
HMMPfam	Oxidoreductase, N-terminal	0.0000000000069
HMMPfam	Oxidoreductase, C-terminal	0.00001
HMMPanther	OXIDOREDUCTASES	1.4e-32
superfamily	NAD(P)-binding domain	2.8e-23
superfamily	Glyceraldehyde-3-phosphate dehydrogenase-like	0.0000012

See the detailed result >

AT3G20790.1

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Computational Description: NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase, N-terminal (InterPro:IPR000683), Oxidoreductase, C-terminal (InterPro:IPR004104), NAD(P)-binding domain (InterPro:IPR016040); Has 7400 Blast hits to 7400 proteins in 1508 species: Archae - 172; Bacteria - 5330; Metazoa - 189; Fungi - 322; Plants - 48; Viruses - 0; Other Eukaryotes - 1339 (source: NCBI BLink).
Link: InterPro Scan - TAIR