F29640

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29640

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29640

Determination of introduced cDNA(s)

  • RAFL09-44-B01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-44-B01 - Resource: pda08388

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-44-B01 - full reading 
    ATCTTCCGCC ACAAGCTATG AGGAGAGTCA CCGGACTTGC CGCGCGCACA 
    ATCTCATCCT CCGTCGCCAT CAATTCACGT CTCACTCAAT CCATGGCGAT 
    TACAACCATT TCATCCTCCG AACCTATCTC CCGAAGATTC GGTGGTCTTC 
    CAGAGATTAA AACTCCGTCT TTCGCCGGCG GAGTCGCTGG GGTTGTGTTC 
    TTCTCTGCCG CTGCTGTATC GTCTCTTGGT CAAGAAGTTC ACGCTAAGGA 
    AATGGCTCAG AAGTTTAATC CTAAAGAAGT TGTTCTGTAT CAGTACGAAG 
    CTTGCCCTTT CTGTAACAAG GTTAAAGCGT TTTTGGATTA CAACAAGATT 
    CCATACAAGG TTGTTGAAGT GAATCCTATC AGTAAGAAAG AAATCAAATG 
    GTCTGATTAT AAGAAGGTGC CTATTCTTAC TGTAGATGGT GAACAAATGG 
    TTGATTCTTC AGTGATAATC GATAGCTTAT TCCAAAAGAT GCACCCTGAA 
    ATTTCCAAGT CCGAAGATGA TGAAGAGACT AAATGGCGCA AGTGGGTGGA 
    CAACCACCTT GTGCATCTTT TGTCACCAAA CATATACAGG AATACTTCAG 
    AGGCTCTTGA GTCCTTTGAA TATATCACCA CACATGGGAA TTTCAGTTTC 
    ACTGAAAGAT TAGTGGCAAA GTATGCAGGA GCAACGGCAA TGTACTTTGT 
    ATCAAAGAAA TTGAAGAAGA AATATAACAT TACAGATGAA CGTGCGGCTC 
    TTTACGATGC TGCAGAGACA TGGGTCGATG CCTTGAAAGA GCGTCCATAC 
    CTTGGTGGGT CAAAACCAAA CTTGGGCGAT CTCGCTGTAT TCGGTGTTCT 
    GAGGCCAATA AGGTACCTTC GATCGGGTAA GGATATGGTG GACAACACAC 
    GCATAGGTGA ATGGTATTCT CGAATGGAGA ACACGGTCGG AGAACCTTCT 
    AGGATCAAAG AATAAAGGAT CATTGGTCGT ATCTCTTAGT GGAAATATGA 
    ATTGCATAAT GAATCGCTGA TTTCACGGGC GTAACAATAT TTTAAGCTTT 
    AGGACTAGAG AAGGAAACAA AGAAACTAAA GGAAATAAAC GTCTCTTCTT 
    TGTGAATGAA GGATTTTGAA TACTGTGAGT CTGTGACATG CTTGGTTTGG 
    TCACTGTTGC TATTACTAAA AAGTCGTTTC TTTGGTTT

    Gene models with high sequence identity

    1. AT5G42150.1 [+] show detail - Glutathione S-transferase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glutaredoxin 2.7e-11
    HMMPanther MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 4.8e-86
    ProfileScan Glutaredoxin 14.171
    PatternScan Glutaredoxin active site 0
    Gene3D Thioredoxin fold 9.3e-10
    superfamily Thioredoxin-like fold 1.6e-15
    superfamily Glutathione S-transferase, C-terminal-like 7.5e-09

    See the detailed result >

    AT5G42150.1

    Model type
    Protein coding
    Short Description
    Glutathione S-transferase family protein
    Computational Description
    Glutathione S-transferase family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutaredoxin active site (InterPro:IPR011767), Thioredoxin-like fold (InterPro:IPR012336); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR