F29709

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29709

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29709

Determination of introduced cDNA(s)

  • RAFL09-49-I18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-49-I18 - Resource: pda06419

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-49-I18 - full reading
    GGTAAATTTC TGCTCTAACT TTTTTTTTTT CATCATCTTT TTGGTTTCGC 
    CAATAATGGA ACTCTTCTTC CACCATTTTC CTGGAAAATC TCGGTATCGA
    GAAGATGAAT CCCTAGACAG ATAAATCTAG AATCACTCAA ATCTCTGCTC
    TTCTTCCGAT TCAGATCGTA TCGAATTTTG AATTTTGTAT CTCGCTACAC
    TGTTCGATTG AGAATTCTTT TTTTCCGATT GATTCGAATC GGATTTTGTT
    TTTTTCCTCG ATATAGAATG ACTTCGAATC AACGTATGTT GTTCTACTCC
    TGCATTGCGA AAGGAACAGT GATTCTCGCA GAATTCGCTT CAAAGGAAGA
    GCCAGGAATC GAAGATCTAG CTTTGAGATG CATTGAGAAC GTACCTCCAC
    ATCATTCGAT GATCTCTCAC ACAGTCCATA AGAGAACCTA CGCTTTGATC
    ATCGATGGAT TGTTTTCGTA TTTCGCGATT TTAGATGAGG TCGTAGCGAA
    ATCGGAGTCT GTATGGCTAT TCAATCGATT GAAATCAGCT ACAGAGTCTC
    TAATGGAAGA CGGATCTACT GCGGATTCGT TGGATAATCC GACTCAACAC
    TGTCTCCAAT CAAAGCTAGA TCCAGTTTTC GCTGAGATTG CTGCTATTGG
    TGGTAATCAT AATAAGGATT TGGAATTGGA GTTTGGATCA CCGAGGAGTA
    TAGCGAGGGA GATTAAGAGT AATAATCAGA GTTTGGATTC GTCCAAGGGA
    CGAAAAGGCG GTGCGTTGAT GCCGCTTTTA GGAAAGCCGT TGAGGGTGTT
    GAAGAACAAG AAGAGATTGC AGACGGAAGC GAAAAGTGAA GGTCATTGGA
    ATGAGAAGAA GATGGACCTA GGAGGAGGAG GTAAAGGAGT GAGGAATGGT
    TTGATTCATG ATCATCATCA TAGACAAAAG GCAAAACAGA TATGGAGGAA
    ACATGTTTGG ATTGTTTTGA TGTTTGATCT CTGTATCTGC CTTGTTCTCT
    TTGGAATCTG GCTTTGGATT TGTCAAGGGT TTCAATGCAT CGATGGGTAA
    TTATCTTCGA TCATCTAAGT TATGTGTGGT TGAATGTTTA AAAAAAATAT
    CCGAGGTGTT GTTTCCAGGG TTTAAAAAGA AAGCCTGGTT TACACGTTTG
    TGATGATGTT TTTGTTTGTG TTTTTTTGAA GTTGTTCTTC ATGAGGTAAA
    AAGAAAAAAA AGTGTTTGTA AAAATCTCTT TTGTAATGAT ATCTCTTCGT
    TTTCTTTGGA TGTTTTGATT AC

    Gene models with high sequence identity

    1. AT4G27840.1 [+] show detail - SNARE-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G27840.1

    Model type
    Protein coding
    Short Description
    SNARE-like superfamily protein
    Computational Description
    SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G52990.1); Has 279 Blast hits to 279 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 279; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR