F29730

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29730

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29730

Determination of introduced cDNA(s)

  • RAFL08-16-K20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-16-K20 - Resource: pda04912

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-16-K20 - full reading 
    AAAATTAGAA AAAACACAAC ACAAAAATAA AAAAAACTTA AGAACATTGT 
    TTCGAGAGAT TTGGTTTGGA GTGAAAATGG CACTAGCAAT CAACGTTTCT 
    TCATCTTCTT CTTCTGCGAT CTCAAGCTCT AGCTTCCCTT CTTCAGATCT 
    CAAAGTAACA AAAATCGGAT CATTGAGGTT ATTGAATCGT ACCAATGTCT 
    CTGCGGCTTC TCTGAGTTTG TCCGGGAAGA GATCCTCCGT GAAAGCTCTT 
    AATGTGCAAT CAATTACAAA GGAATCCATT GTTGCTTCTG AGGTTACAGA 
    GAAGCTAGAT GTGGTGGAAG TTGAAGACTT TGAGGAACTA GCAAAGAGAT 
    TAGAGAATGC TTCTCCTCTT GAGATCATGG ATAAAGCTCT TGAGAAGTTT 
    GGGAATGACA TTGCTATTGC CTTTAGTGGA GCTGAAGATG TTGCTCTGAT 
    TGAGTATGCT CATTTAACTG GAAGACCTTA TAGGGTATTC AGTTTGGATA 
    CAGGGAGATT GAATCCAGAA ACATATAGAC TCTTCGATAC CGTGGAGAAA 
    CATTACGGTA TTCGGATTGA GTATATGTTT CCTGATGCTG TTGAGGTTCA 
    AGCTTTAGTT AGGAACAAGG GTTTGTTCTC TTTCTATGAA GATGGTCACC 
    AGGAGTGTTG CCGTATTAGA AAGGTGAGAC CTTTGAGGCG TGCGTTGAAG 
    GGTTTACGTG CTTGGATCAC TGGTCAGAGG AAAGATCAAT CACCCGGGAC 
    AAGATCGGAG ATTCCTGTTG TTCAGGTTGA TCCAGTGTTT GAAGGATTAG 
    ATGGTGGAGT TGGTAGTTTG GTGAAGTGGA ATCCGGTTGC TAATGTTGAA 
    GGGAATGATG TTTGGAATTT CTTGAGGACG ATGGATGTTC CTGTCAACAC 
    GCTTCACGCT GCGGGTTATG TTTCAATCGG ATGTGAGCCA TGCACGAGAG 
    CGGTTTTGCC GGGTCAGCAT GAGAGAGAAG GGAGATGGTG GTGGGAAGAT 
    GCTAAGGCTA AAGAGTGTGG CCTTCACAAA GGGAATATCA AGGAGAATAC 
    CAATGGAAAC GCAACCGCTA ATGTCAACGG GACAGCCTCA GTCGCGGATA 
    TCTTCAATAG CGAGAATGTT GTGAACTTGA GCAGGCAAGG GATTGAGAAT 
    TTGATGAAGT TAGAGAACCG GAAAGAGGCT TGGATCGTTG TGCTTTATGC 
    ACCGTGGTGC CCGTTTTGTC AGGCAATGGA AGCTTCATTC GATGAATTGG 
    CGGATAAGCT GGGAGGAAGT GGTGTGAAGG TTGCTAAGTT TAGAGCTGAT 
    GGTGACCAGA AGGACTTTGC CAAAAAGGAG TTGCAGCTTG GAAGCTTTCC 
    AACAATACTT GTGTTCCCAA AGAACTCTTC AAGACCAATC AAGTATCCAT 
    CAGAGAAGAG AGATGTTGAT TCTTTGACAT CTTTCTTGAA TCTTGTTCGG 
    TAAATCCGCA ATAAAATCCG CCGACTCTAC GATGACGAAG AGATCAATAA 
    TAGACCATCC AGTCTCGTTC CAGATTGCTA GAACAGATGA AGAAGGTGAA 
    GATGAGAATC TCTATTTGGA GCTTTAGCCT TTTGTATAGC TGTGGTTAAA 
    AATAATTACG CCAAGGTTTT GCCTTTTGTG AGTTTATTTT TACCAATTTT 
    CAGT

    Gene models with high sequence identity

    1. AT4G21990.1 [+] show detail - APS reductase 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 1.8e-57
    Gene3D Thioredoxin fold 7.5e-17
    ProfileScan Thioredoxin-like 11.33
    HMMTigr Thioredoxin-independent 5'-adenylylsulphate reductase 0
    HMMPfam Phosphoadenosine phosphosulphate reductase 5.2e-42
    HMMPfam Thioredoxin domain 7.1e-12
    HMMPanther PROTEIN DISULFIDE ISOMERASE 1.9e-10
    superfamily Adenine nucleotide alpha hydrolases-like 1.1e-53
    superfamily Thioredoxin-like fold 4e-23

    See the detailed result >

    AT4G21990.1

    Model type
    Protein coding
    Short Description
    APS reductase 3
    Curator Summary
    Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group.
    Computational Description
    APS reductase 3 (APR3); FUNCTIONS IN: adenylyl-sulfate reductase activity; INVOLVED IN: sulfate assimilation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Thioredoxin-independent 5'-adenylylsulphate reductase (InterPro:IPR004508), Thioredoxin fold (InterPro:IPR012335), Phosphoadenosine phosphosulphate reductase (InterPro:IPR002500), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: APS reductase 1 (TAIR:AT4G04610.1); Has 5608 Blast hits to 5124 proteins in 1636 species: Archae - 157; Bacteria - 2658; Metazoa - 1176; Fungi - 493; Plants - 493; Viruses - 0; Other Eukaryotes - 631 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR