F29731

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29731

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29731

Determination of introduced cDNA(s)

  • RAFL06-76-J08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-76-J08 - Resource: pda03631

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-76-J08 - full reading 
    GCACAGCCCA AAAAGCTTGA CCTAACGGCT ATGTTTTCTT TACTTTCACC 
    ATAAATAAGC ACCTCTTGAG GTTGCAAACA CACACACACA CACACACTCA 
    CTTCAAAAGA GTTAGTAAGA AGTTGGGGTT TGATTAACGT TTTGCATCGG 
    AGATGGGTTT GGTCATGAGG TTTGATCTTT ACCTTATGTT TGTGATGTTG 
    ATGGGTTTAG GGTTTACGAT ATCAAATGGA TACAAGTCTA TGTTGGTGGG 
    AAAGATGGTT GGGTCCCGAC TCCTTCCGAA GATTATTCTC ATTGGTCTCA 
    CCGAAACCGG TTTCAAGTCA ACGACACTGT TCATTTTAAG TACGCCAAGG 
    GAAAAGATTC AGTGTTGGAG GTGACTGAAC AAGAGTACAA CACATGCAAC 
    ACGACACACC CCCTGACTTC CCTCTCAGAC GGAGACTCTC TCTTCCTACT 
    TAGCCACTCA GGTTCCTACT TTTTCATTAG TGGCAACTCT CAAAACTGTC 
    TTAAAGGTCA GAAGCTAGCC GTCAAGGTCT TGTCCACCGT CCACCACAGC 
    CACTCTCCTC GTCATACCTC TCCCTCCCCG TCTCCGGTCC ATCAGGAGTT 
    GTCTTCGCCG GGGCCTTCTC CAGGAGTGGA ACCATCATCT GATTCAAACT 
    CTCGTGTTCC AGCTCCAGGA CCGGCTACAG CTCCCAATTC GGCCGGTTTG 
    GTTGGTCCGG GGATGGTGGT TCTTGTGATT ATGATAAGTT CTCTGTTTTG 
    AGGGGTTTAT ATATTGTCGC TAGTCATTAA ATTTGTGAGG GTATTAATTA 
    CTCTACCATT GAGTTTCATA TTTATGTGCC TTTTTATTTG TATGTTTGAA 
    GCATCTTGTA ACCCATTTTT AATGTTTCCG CTGTCTCGTT TTTGTTCTTA 
    CTAAAGAAAA TATTTAAGC

    Gene models with high sequence identity

    1. AT4G28365.1 [+] show detail - early nodulin-like protein 3
      E-value: 0; Score: 99.78

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Cupredoxin 1.4e-27
    superfamily Cupredoxin 1.6e-30
    HMMPfam Plastocyanin-like 8.2e-22
    BlastProDom Plastocyanin-like 1e-19

    See the detailed result >

    AT4G28365.1

    Model type
    Protein coding
    Short Description
    early nodulin-like protein 3
    Computational Description
    early nodulin-like protein 3 (ENODL3); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: early nodulin-like protein 4 (TAIR:AT4G32490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR