F29736

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29736

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29736

Determination of introduced cDNA(s)

RAFL09-34-E14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-34-E14 - Resource: pda06049

full reading [+] show sequence

AGAGTTGGAA TTTTCCCGGG GAAGCTCTTT TCAATGGAGG TCCTTGCGAG 
CTCTTCATTA TCCCCAATTT CTTTTACTAA GCCTAACAAA ATAAACCCTA 
ATTTCTCAAT CCAGGTGAAA TTGTGGGTAA AACAACCTCC AAAGATTTCA 
AAAGCTAGCA AATTTAGTTA TGCTCGTAGT CGTAGTAACA TTTCAAGGAG 
CAATGCAGCA AACCCAGGAG TCGTGTTCGT CTGTAATAGA TTTCTGTGTG 
TTATCGAAAG AAATGATCAG AGGAAATTAT CTGGGAAGGT TATGATGAAA 
TCTTCTGTTA ATTTCAGACA GAATCTCTCT GTTGCATTAG TTCGGATCGT 
TTCTGTTCTG CTTGTCTCTT CCATTTCTGT TGTTACCACT GATTCACCAC 
CATCATGGGG TCTTACTGAA GAGAATCTTC TCTTCCTCGA GGCTTGGAGA 
ACAATTGATC GTGCTTATAT TGATAAAACC TTTAATGGAC AAAGCTGGTT 
TCGTTACAGA GAGACTGCTT TACGAAATGA GCCTATGAAC ACTCGAGAAG 
AGACATACAT GGCTATCAAG AAAATGGTGG CAACACTAGA TGATCCTTTT 
ACTCGATTCT TGGAGCCCGG AAAGTTCAAG AGTTTGCGGT CGGGGACTCA 
AGGGGCGGTT ACGGGTGTTG GGCTGTCGAT AGGTTACCCC ACTGCATCAG 
ATGGACCACC AGCTGGGCTT GTTGTTATAT CAGCTGCTCC AGGAGGTCCT 
GCAAATAGGG CGGGGATATT ACCTGGCGAT GTTATTCAAG GAATTGATAA 
TACAACCACA GAAACTCTTA CCATATACGA TGCTGCACAG ATGTTGCAGG 
GACCTGAAGG AAGTGCAGTG GAGCTAGCGA TTCGCAGTGG ACCTGAAACG 
AGACTCTTAA CTTTGACGCG AGAGCGGGTT TCTGTGAATC CAGTGAAGTC 
AAGATTATGT GAACTTCCTG GTTCTGGGAG TAACTCCCCT AAGATTGGCT 
ATATCAAGCT AACAACATTC AATCAAAATG CTTCTAGTGC GGTAAGGGAA 
GCTATTGAAA CCTTGAGAGG CAACAATGTA AACGCATTCG TCTTGGACCT 
TCGAGACAAT AGTGGAGGTT CTTTCCCAGA AGGAATTGAG ATTGCTAAAT 
TTTGGTTAGA TAAAGGAGTG ATTGTGTATA TTTGCGATAG TCGAGGTGTT 
AGAGATATAT ATGATACTGA TGGAAGCAAT GCTATAGCAA CCTCTGAGCC 
TCTTGCCGTT CTTGTTAACA AAGGCACCGC GAGTGCCAGC GAGATATTAG 
CAGGTGCCTT GAAAGATAAT AAACGTGCTC TGGTTTATGG AGAACCAACT 
TACGGAAAAG GCAAGATACA GTCGGTTTTT GAGCTTTCTG ATGGTTCGGG 
CTTGGCAGTA ACAGTTGCTC GATATGAAAC ACCAGCTCAC ACAGATATAG 
ACAAAGTCGG TGTAACTCCT GATCATCCAT TGCCAAAGTC GTTTCCGAAA 
GATGAAGAGG CGTTCTGTGG ATGCCTTAAG GATCCTACAG CTGCTTGTTA 
TCTCAATCAA GGCCTACTTT TTTCTAGATG ATTTTGTTTT GTTCAAACTT 
TGTTCTGACA ACATATGACT AAAATTTATT GACTCAAGCT TTGTACTTTT 
GAAGATTCGC CATAGCTTTA GCTAATCGAA ACCAGAAATT TC

Gene models with high sequence identity

AT4G17740.1 [+] show detail - Peptidase S41 family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Peptidase S41A, C-terminal peptidase	3e-84
superfamily	ClpP/crotonase	7.7e-76
superfamily	PDZ/DHR/GLGF	1.6e-17
ProfileScan	PDZ/DHR/GLGF	11.843
Gene3D	no description	1e-29
Gene3D	no description	1e-46
HMMPanther	SERINE PROTEASE HTRA2	0.00014
HMMPanther	SERINE PROTEASE FAMILY S1C HTRA-RELATED	0.00014
HMMSmart	PDZ/DHR/GLGF	2e-13
HMMSmart	Peptidase S41	7.4e-96
HMMPfam	Peptidase S41	1.5e-50
HMMPfam	PDZ/DHR/GLGF	1.1e-07

See the detailed result >

AT4G17740.1

Model type: Protein coding
Short Description: Peptidase S41 family protein
Computational Description: Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: thylakoid, thylakoid lumen, mitochondrion, chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT3G57680.1); Has 9204 Blast hits to 9194 proteins in 1993 species: Archae - 0; Bacteria - 5702; Metazoa - 14; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 3335 (source: NCBI BLink).
Link: InterPro Scan - TAIR