F29739

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	desaturated green (PATO:0001272) (Cauline leaf::Color::pale)
	rosette leaf (PO:0000014)	decreased length (PATO:0000574) (Rosette leaf::Shape::short)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others) present in fewer numbers in organism (PATO:0001997) (Stem::Number::few) abnormal (PATO:0000460) (Stem::Others) abnormal (PATO:0000460) (Stem::Shape::zigzag)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)
T2
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small)
	sporophyte vegetative stage (PO:0007134)	increased speed (PATO:0000303) (Adult plant::Growth::fast)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29739

Determination of introduced cDNA(s)

RAFL09-93-H23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-93-H23 - Resource: pda06984

full reading [+] show sequence

CCCCCTTTTT CACTCTCTTC ATTTATTCTT CCCCTCATCA TCATCATCAT 
CTTCTTCTTT AACCAAAAAC ACAACTTACA AGAAAACTGT TGAATCTTTG 
TATTTATTTA CATCTCCTTT GACCTTTAAT AAGAATCTGA GTGGTTGGTC 
TCTGATTTGA TGAGATGACT GTTGAGCTGA TGATGAGCAG CTACAGCGGC 
GGCGGAGGAG GAGGTGATGG TTTTCCTGCA ATCGCCGCGG CGGCGAAAAT 
GGAAGATACC GCTTTGAGAG AAGCTGCTTC TGCAGGGATT CACGGTGTGG 
AGGAGTTTCT TAAACTGATC GGTCAAAGTC AACAACCAAC GGAGAAGAGT 
CAGACGGAGA TAACCGCGGT GACTGACGTC GCCGTTAACA GCTTCAAGAA 
GGTCATTTCT CTACTCGGTA GATCTAGAAC CGGACACGCT AGATTCAGAC 
GAGCTCCCGC GTCAACGCAA ACGCCGTTTA AGCAAACGCC GGTGGTTGAG 
GAGGAGGTGG AGGTGGAGGA GAAGAAGCCA GAAACAAGCT CCGTGTTAAC 
AAAACAGAAA ACAGAGCAAT ATCACGGTGG TGGATCTGCG TTTAGAGTTT 
ATTGTCCAAC ACCAATTCAT CGTCGTCCTC CTCTATCACA CAATAACAAC 
AACAATCAGA ATCAAACAAA GAACGGTTCG TCTTCTTCAT CTCCTCCGAT 
GCTCGCAAAC GGAGCACCGT CAACGATAAA CTTTGCGCCG TCACCACCAG 
TCTCAGCGAC GAACTCATTC ATGTCTTCTC ATAGATGTGA CACCGATAGT 
ACTCACATGT CATCAGGATT CGAGTTCACT AACCCATCTC AGCTCTCTGG 
TTCGAGAGGT AAACCTCCTT TATCATCAGC TTCGTTGAAG AGAAGATGTA 
ATTCATCTCC CTCAAGCCGT TGCCATTGCT CCAAGAAAAG GAAATCAAGA 
GTAAAAAGAG TGATTAGAGT TCCAGCAGTA AGTAGCAAAA TGGCTGATAT 
ACCATCAGAT GAGTTTTCAT GGAGAAAATA TGGTCAAAAA CCAATCAAAG 
GCTCTCCTCA TCCTCGGGGA TATTACAAGT GCAGCAGTGT AAGAGGTTGT 
CCGGCGCGTA AGCATGTGGA GCGTGCACTA GATGATGCGA TGATGCTAAT 
CGTGACGTAC GAAGGAGACC ACAACCATGC TTTGGTTCTC GAGACGACGA 
CGATGAATCA TGACAAAACT CTTTAGTTTC TCGAGTTTGA GGGGAACTGT 
CTGTGTGTGA CCACTATCCA GATTAGTCAA CGACAGAGTG GGCCCGCACT 
GCACTTTTTT ATTCTTTTCT TTTTGAAAAG CTTTTGCTTT ATCTTTCTTT 
TTGATTGGAG GAAATAGAGG GAGGGGAGAT AAAGACGAGA GAGGAACGTT 
GTGGATCTTG ATGGAAGTTG AATCATGTGA ATGTCCTTTT CTGTTTGAAA 
AAAAAAAAAA AAA

Gene models with high sequence identity

AT4G24240.1 [+] show detail - WRKY DNA-binding protein 7
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	DNA-binding WRKY	29.872
Gene3D	no description	1.5e-23
HMMPfam	DNA-binding WRKY	4.8e-28
HMMPfam	Transcription factor, WRKY, Zn-cluster	8.9e-17
HMMSmart	DNA-binding WRKY	5.9e-37

See the detailed result >

AT4G24240.1

Model type: Protein coding
Short Description: WRKY DNA-binding protein 7
Curator Summary: Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family.
Computational Description: WRKY DNA-binding protein 7 (WRKY7); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 11 (TAIR:AT4G31550.1); Has 3521 Blast hits to 3002 proteins in 204 species: Archae - 0; Bacteria - 2; Metazoa - 39; Fungi - 4; Plants - 3353; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
Link: InterPro Scan - TAIR