F29751

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others) present in fewer numbers in organism (PATO:0001997) (Stem::Number::few)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29751

Determination of introduced cDNA(s)

RAFL05-11-E07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-11-E07 - Resource: pda02505

full reading [+] show sequence

AGCTATTTGG TTTCTCTATC CGATTCGTCT CTCTCACGCC CTCACGTTTA 
TCCACCTCAT CCTCAAACCA AACCACAAGA CCTCTTTTTT AAGTAACCAA 
TCACAGAGAG ATAGAGAGAG AGAACAGAGT CAATGTCAAT GGCGTCTATA 
GCTTCTTCTT CTTCCACCAC CCTACTCTCT TCCTCTAGGG TTCTTCTTCC 
CTCCAAGTCT TCTCTTTTAT CTCCTACCGT CTCTTTCCCC AGAATCATAC 
CCTCTTCCTC GGCATCATCC TCTTCTCTCT GTTCCGGGTT CTCCAGTCTC 
GGTTCCCTCA CCACCAACCG CTCCGCCTCA CGCCGGAACT TCGCCGTCAA 
GGCTCAGGCT GATGATTTAC CACTGGTCGG TAATAAGGCG CCTGATTTTG 
AAGCTGAGGC AGTTTTTGAT CAAGAGTTCA TAAAGGTGAA GCTCTCTGAG 
TACATTGGCA AAAAGTATGT TATTCTATTC TTCTACCCTT TGGACTTCAC 
TTTTGTCTGC CCCACTGAGA TTACTGCCTT CAGTGACCGT TATGAAGAAT 
TTGAGAAGCT AAACACCGAA GTATTAGGGG TCTCTGTCGA CAGTGTGTTC 
TCGCATCTTG CGTGGGTCCA AACAGACAGA AAGTCGGGAG GGCTCGGTGA 
TCTGAATTAT CCTCTTGTTT CGGATATCAC TAAATCCATT TCAAAATCGT 
TTGGAGTGCT CATCCCTGAT CAGGGCATTG CACTGAGAGG GCTTTTCATC 
ATAGACAAGG AAGGAGTCAT TCAGCATTCC ACCATCAACA ACCTCGGTAT 
TGGCCGAAGT GTTGATGAGA CAATGAGAAC CCTCCAGGCA TTACAGTATG 
TTCAAGAAAA CCCGGATGAA GTGTGCCCTG CGGGATGGAA GCCAGGGGAG 
AAATCAATGA AACCTGACCC CAAGCTCAGC AAAGAATACT TTTCAGCTAT 
CTAGAGGCTA AGATTGAACA CATGTTTGGT GAAAATTAGC AATCAGAGTT 
GTTTTATTCG TCTTTTCAAA GTTGGAGCAG AGTTGTTATT TTTAGCCAAA 
GAACCTTTGT ATCTATCTCA TCTTTCTCCT GTTTCTGCTA TGTGATTCTC 
CTTAAATTGA ATCAAAAATA AAGAAATCCT TCTTTTCTTT TG

Gene models with high sequence identity

AT5G06290.1 [+] show detail - 2-cysteine peroxiredoxin B
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen	8.2e-42
HMMPfam	Peroxiredoxin, C-terminal	6.5e-11
ProfileScan	Thioredoxin-like	18.068
Gene3D	Thioredoxin fold	5.3e-72
superfamily	Thioredoxin-like fold	2.2e-66
HMMPanther	PEROXIREDOXINS, PRX-1, PRX-2, PRX-3	1e-121
HMMPanther	PEROXIREDOXIN	1e-121

See the detailed result >

AT5G06290.1

Model type: Protein coding
Short Description: 2-cysteine peroxiredoxin B
Curator Summary: Encodes a 2-Cys peroxiredoxin (2-Cys PrxB) that contains two catalytic Cys residues.
Computational Description: 2-cysteine peroxiredoxin B (2-Cys Prx B); FUNCTIONS IN: peroxiredoxin activity, antioxidant activity; INVOLVED IN: response to cold, defense response to bacterium; LOCATED IN: apoplast, stromule, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT3G11630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR