F29839

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29839

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29839

Determination of introduced cDNA(s)

  • RAFL09-39-B02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-39-B02 - Resource: pda06203

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-39-B02 - full reading 
    AAGCTTTATC TCTTTCTTTC TCTCCTCTCT ATCTTTCTCT CACACTCATG 
    GGTCTTCCAA CAGATTTCAA AGAGCTTCAG ATTCCAGGTT ACGTACTAAA 
    AACACTTTAC GTCATCGGTT TCTTTAGAGA CATGGTCGAT GCTCTTTGTC 
    CTTACATCGG TCTACCAAGT TTTCTTGACC ACAACGAGAC CTCTCGATCC 
    GACCCGACCC GACTCGCTCT CTCCACGTCA GCAACTCTTG CCAACGAGTT 
    AATCCCGGTG GTTCGTTTCT CCGATCTTTT AACCGATCCG GAAGATTGCT 
    GCACGGTTTG CTTATCCGAT TTTGTATCCG ACGATAAGAT TAGACAGCTG 
    CCGAAGTGTG GACACGTGTT TCATCATCGT TGTTTAGACC GTTGGATCGT 
    TGACTGTAAT AAGATAACGT GCCCGATTTG TCGGAACCGG TTCTTACCGG 
    AGGAAAAGTC CACGCCGTTT GATTGGGGTA CTTCAGATTG GTTTAGAGAT 
    GAAGTGGAGA GTACCAACTA ATAATGATGG TTTTACTTTT ACTTTTTACT 
    TTTTTCACGG TAATATTTTT CTACTGTATA ATTCTTTCTT CCAAACTACT 
    GTATAATTCA AGTATAAGAT TATGTAATTG TGTATATTAG CATCAATCAT 
    CTTTCTTTGT TAAAGAACCG TCTGTATAAA ATCTTCCAAT GTAATCTGCT 
    TTTCTTTTAT TTGAATAAAA AAGTGGACAA ATAAACAAAA AAAAAAAAAA 
    AA

    Gene models with high sequence identity

    1. AT4G11360.1 [+] show detail - RING-H2 finger A1B
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, RING-type 13.124
    HMMSmart Zinc finger, RING-type 2.6e-06
    HMMPfam Zinc finger, C3HC4 RING-type 1.4e-06
    superfamily RING/U-box 8.5e-16
    Gene3D no description 7.4e-11
    HMMPanther gb def: Hypothetical protein At2g28920 6.3e-15
    HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 6.3e-15

    See the detailed result >

    AT4G11360.1

    Model type
    Protein coding
    Short Description
    RING-H2 finger A1B
    Curator Summary
    Encodes a putative RING-H2 finger protein RHA1b.
    Computational Description
    RING-H2 finger A1B (RHA1B); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to cadmium ion, response to chitin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger A1A (TAIR:AT4G11370.1); Has 7546 Blast hits to 7528 proteins in 261 species: Archae - 0; Bacteria - 0; Metazoa - 1890; Fungi - 589; Plants - 4122; Viruses - 19; Other Eukaryotes - 926 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR