F29902

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29902

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Seed::deep brown
Seed::deep red

Original: F29902

Determination of introduced cDNA(s)

RAFL06-69-D03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-69-D03 - Resource: pda09445

full reading [+] show sequence

AGTTTCAGCG AAACGATGGA GCTTCTCTGC TCACCAACGT CTCTTTCCTC 
CTCCTTCGCT CTCTCTTCTG CTCTTTTAGT CCCTCGTTCG TTCTCCATGC 
CAGGGACAAG GAGATTCATG GTTCTGTGTA GTTCCCAGAA GGAAAGTCAG 
ATGACAGTGT CAGTAACTGG AGCAACTGGA TTCATAGGGA GACGATTGGT 
TCAGAGACTT CGTGCTGATA ACCACGCTAT CCGGGTCTTA ACACGCTCTA 
AATCCAAAGC TGAGCAAATA TTTCCTGCCA AGGACTTCCC AGGTATTGTG 
ATTGCAGAAG AATCGGAGTG GAAGAACTGT GTACAAGGCT CTACTGCTGT 
TGTGAACTTG GCAGGACTGC CTATTAGTAC AAGGTGGTCT CCCGAGATCA 
AGAAAGAGAT TAAGGGCAGC CGGATCCGTG TCACCTCCAA AGTTGTTGAC 
TTAATCAATA ATTCACCAGC AGAAGCTAGG CCTACCGTTC TAGTTAGCGC 
CACGGCTGTT GGTTACTATG GTACTAGTGA GACAGGAGTA TTCGACGAAA 
ATAGTCCATC AGGGAAGGAC TATCTTGCAG AGGTTTGCAG AGAATGGGAA 
GGAACTGCAT TGAAAGCAAA TAAGGATGTT AGAGTGGCAC TTATCCGCAT 
TGGTGTTGTT CTTGGCAAAG ACGGTGGAGC TTTGGCCATG ATGATACCCT 
TTTTCCAAAT GTTTGCTGGA GGACCTCTGG GTTCCGGACA ACAATGGTTC 
TCTTGGATTC ACGTGGATGA CTTGGTGAAC TTAATTTACG AGGCCCTCAC 
TAATCCATCT TATAAAGGAG TTATTAATGG GACTGCGCCG AATCCGGTTA 
GGCTTGGGGA AATGTGCCAG CAGCTAGGCA GTGTTCTTAG CCGACCATCG 
TGGCTACCAG TTCCTGACTT TGCACTCAAA GCTTTGCTCG GAGAAGGTGC 
CACTGTAGTT CTGGAGGGAC AGAAGGTATT ACCTGTAAGA GCCAAAGAGC 
TTGGTTTTGA ATTCAAGTAT AAATACGTGA AGGATGCACT CAGAGCCATT 
ATGCAATAAG GTGACACACA TAAGCATCTT TGTAAAATTG GTTTTGATCA 
CAGAAAATCC CCAGAAAAAC AAGATATTCT TTTCTTTTCG TCTCTATATC 
TTTCTTTTTG AGTAAAACTC GAGAAATGTA TTTATGGTAA AAAGTGTTTT 
CGGTGTTATC TCAGAAACCA GAGATCACAG ATGTGTTGAG GATATTATAA 
AAAAAAAAAA AATAAAAAAA AAAAAAAA

Gene models with high sequence identity

AT2G21280.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Sugar nucleotide epimerase YfcH, putative	6.8e-173
HMMPanther	Sugar nucleotide epimerase YfcH, putative	3.5e-82
Gene3D	NAD(P)-binding domain	1.3e-15
HMMPfam	NAD-dependent epimerase/dehydratase	1.6e-17
HMMPfam	Domain of unknown function DUF1731, C-terminal	2.4e-17
superfamily	NAD(P)-binding domain	1.5e-40

See the detailed result >

AT2G21280.1

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Curator Summary: A nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system.
Computational Description: SULA; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar nucleotide epimerase YfcH, putative (InterPro:IPR010099), NAD-dependent epimerase/dehydratase (InterPro:IPR001509), Domain of unknown function DUF1731, C-terminal (InterPro:IPR013549), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G33360.2); Has 4854 Blast hits to 4853 proteins in 1452 species: Archae - 38; Bacteria - 3329; Metazoa - 111; Fungi - 30; Plants - 185; Viruses - 0; Other Eukaryotes - 1161 (source: NCBI BLink).
Link: InterPro Scan - TAIR