F29906

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29906

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
  • increased thickness (PATO:0000591)
    (Silique::Shape::thick)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
T2  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
  • increased thickness (PATO:0000591)
    (Silique::Shape::thick)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29906

Determination of introduced cDNA(s)

  • RAFL09-86-D05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-86-D05 - Resource: pda17874

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-86-D05 - full reading
    CCGACTTTCT CAAACAATCT CTCTCTCTGG CATTTGGATT TGGAAGTGCT 
    TTTTGTATAT ATATCCAACA AAGGAATCAG ATCGGAGATG TCGGATGTTT
    CCGGTGACGG AGATTTATCG GCGACGGTTA CTGAACATGA AGTAACTCCA
    CAACCGCCGG TTTCTTCGGC GACGTATCCG TCATTAACGG TGTCGGCGTC
    TTACAAAGAG AGCAGCGGAG GTAAAAGCTC GTCGAAGAGG AGACCAATAA
    GGCCGAGTTT CGACGCTGCG GCTGATAATG AGTTTATTAC TTTGCTTCAT
    GGCTCGGATC CAGTGAAAGT GGAGCTTAAT CGACTAGAGA ATGAAGTTAG
    AGATAAGGAT CGGGAGTTAG GAGAAGCAAA CGCTGAGATC AAAGCGCTTA
    GGTTGTCTGA GAGACAAAGA GAGAAAGCTG TTGAAGAGCT TACTGAGGAG
    CTTACTAAGT TGGATGAGAA GCTCAAGTTG ACTGAATCCA TTCTCGAAAG
    CAAAAATCTA GAAATCAAGA AAATCAATGA GGAAAAGAAA GCATCAATGG
    CTGCTCAGTT TGCTGCTGAA GCCACTTTAA GAAGAGTCCA TGCTGCTCAA
    AAGGATGATG ACATGCCTCC TATTGAAGCC ATCCTTGCTC CATTAGAAGC
    TGAACTTAAG CTTGCACGAT CAGAGATTGG AAAGCTTCAA GAAGATAACA
    GGGCTTTGGA CCGTCTGACT AAATCAAAGG AAGCTGCCTT ACTTGAAGCT
    GAGAGGACCG TTGAAGCTGC CATGGCAAAA GCCGCTATGG TTGATGATCT
    TCAGAATAAG AACCAGGAGC TAATGAAGCA AATTGAAATC TGTCAGGAAG
    AAAACAAAAT TCTAGATAGA ATGCATAGGC AGAAGGTTGC TGAAGTGGAA
    AAGCTTACTC AGACAGTACG AGAGCTAGAA GAGGCTGTTC TTGCAGGTGG
    TGCTGCTGCA AATGCCGTGA GGGATTACCA GCGGAAATTT CAAGAGATGA
    ATGAAGAGCG GAAAACTCTT GACCGGGAGC TTGCACGTGC AAAGGTTACA
    GCAAACAGAG TTGCCACTGT GGTAGCAAAT GAGTGGAAAG ATGGTAATGA
    TAAAGTGATG CCTGTGAAGC AATGGCTCGA AGAACGAAGG TTTCTACAGG
    GAGAAATGCA GCAACTTCGT GATAAGCTCG CCATAACAGA CCGGGCTGCA
    AAATCCGAGG CACAGTTAAA AGAGAAGTTT CAACTGCGGC TTAAAGTGCT
    TGAGGAGACA CTTCGAGGAA CTTCAAGCAG CGCCACCAGG AACACACCCG
    AGGCAAGAAG CATGAGTAAT GGACCTTCTC GCAGGCAGTC GCTTGGTGGA
    GCTGAAAACT TACAAAAATT TACATCAAAC GGTGCTTTAT CAAAGAAAGC
    TCCAGCATCT CAGATGAGGC ATTCATTGTC TATTAATTCA ACTTCGGTGT
    TGAAGAATGC TAAAGGAACA TCTAAGTCAT TTGATGGAGG CACAAGATCC
    GTGGATAGAG GCAAAGCACT TTTAAACGGA CCTGGGAATT ATTCCTTCAA
    CAAGGCTACT GATGACTCTA AGGAAGCAGA GTCAGGTAAT GGGTGGAAAG
    AAAATTCAGA GGAGAAGCCA CAAAGTGAAG ACCCTGAAGC AGCAACTGAG
    GACAGTGTCC CTGGTGTTTT GTATGATTTA CTACAGAAAG AAGTAGTTTC
    TTTGAGGAAA GCCTCTAATG AAAAGGATCA AAGCCTCAAA GACAAAGATG
    ATGCCATCGA GATGCTAGCG AAGAAGGTGG AAACATTAAC AAAGGCAATG
    GAGGTTGAAG CAAAGAAGAT GAGACGGGAA GTAGCTGCAA TGGAAAAAGA
    AGTTGCTGCA ATGCGTGTGG AGAAAGATCA GGACGCCAGA GCCAAAAGGT
    TTTCAAATAG CAAGAGCCCA TCCAACACCG CCCAGATTCT TGCGGGAAGA
    GCTGCTGGAC GAAGTGGCGG GTTAACGAAG AGTACCCAGT GAAGGGAGAT
    TCAAGAAAAT AACAAGTAAA AGAATGTCCT TGGCTCTTGT TATTCAGCTG
    TTTTAACCTT ATATCATGGC TTTTACTTTG TTTTTGTTTA CCTCATGTGA
    TTGGTTGTAT CACCATATAT AACTTAGCAT GCTGATAATC CCATCCTCAC
    ACCTATAACC TAGTAAAAAG ATAAGAAAGA GAGTTTGTGA CATAGATTTG
    GTGTTAAAGT GGTTAGAGGG AGGAGAAGAA AAGCCGAGGG AGAGAGTGAG
    AGATGTTGAC ATTTTGGCTA ACATTTTCAT CTCTCTTTTC GGGAGTTAGT
    TTGTTTTTGG TGTATAGGTT TGGTATTTGG CTTCTCTAGA GCTTGTGTAC
    CTCTGATTCC TTTTATTTGT TTGTTACTCT ATTGCACTCT TTGTGTGATT
    TATTCGTTTG TATTTTGGGT TTGCTGATAT ATAATATATG ATTTGATATA
    TTTGAACAAA AAAA

    Gene models with high sequence identity

    1. AT1G24764.1 [+] show detail - microtubule-associated proteins 70-2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Myosin II heavy chain-like 1.1e-203

    See the detailed result >

    AT1G24764.1

    Model type
    Protein coding
    Short Description
    microtubule-associated proteins 70-2
    Curator Summary
    Member of the MAP70 protein family.
    Computational Description
    microtubule-associated proteins 70-2 (MAP70-2); FUNCTIONS IN: microtubule binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: microtubule; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Myosin II heavy chain-like (InterPro:IPR009768); BEST Arabidopsis thaliana protein match is: microtubule-associated proteins 70-1 (TAIR:AT1G68060.1); Has 48419 Blast hits to 29383 proteins in 2175 species: Archae - 681; Bacteria - 6937; Metazoa - 23825; Fungi - 4071; Plants - 3202; Viruses - 118; Other Eukaryotes - 9585 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR