F29911

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29911

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29911

Determination of introduced cDNA(s)

  • RAFL05-16-I21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-I21 - Resource: pda02689

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-I21 - full reading
    GCCTTTGTCT CTCATTCTTC TTCTCCATTT CGAAAAGAAG ATGAAGGTGA 
    TAGATAAGAT CCAGTCATTA GCCGACGAAG GCAAAACAGC GTTTTCCTTC
    GAATTCTTCC CACCAAAGAC AGAAGATGGA GTCGACAATC TCTTTGAGAG
    AATGGATCGA ATGGTTGCTT ATGGTCCAAC GTTTTGCGAT ATCACTTGGG
    GAGCTGGTGG ATCTACCGCA GATCTAACGC TTGATATAGC TTCGAGGATG
    CAAAACGTTG TTTGTGTTGA GAGTATGATG CATCTTACGT GTACTAACAT
    GCCTGTTGAG AAGATTGATC ATGCTCTTGA GACTATTAGA TCTAATGGGA
    TTCAGAATGT GCTTGCTCTT AGAGGTGATC CTCCTCATGG TCAAGATAAG
    TTTGTTCAGG TTGAAGGTGG TTTTGATTGT GCTTTGGATC TTGTTAATCA
    CATTCGTAGC AAGTATGGTG ATTACTTTGG TATCACTGTC GCTGGTTATC
    CTGAGGCGCA TCCTGATGTT ATTGGTGAGA ATGGTCTTGC GTCTAATGAA
    GCTTATCAGA GTGATCTTGA GTATCTGAAG AAAAAGATTG ATGCTGGAGC
    TGATCTGATT GTTACTCAGC TTTTCTATGA TACTGATATA TTCCTCAAGT
    TTGTGAATGA TTGTCGGCAA ATTGGGATTA GTTGTCCCAT TGTTCCTGGA
    ATTATGCCTA TTAATAACTA CAGAGGCTTT TTGCGTATGA CTGGTTTCTG
    CAAGACTAAG ATACCAGTTG AGGTGATGGC TGCCTTGGAG CCTATCAAGG
    ATAACGAAGA AGCTGTGAAA GCCTATGGTA TTCACCTTGG AACAGAGATG
    TGTAAAAAGA TGTTGGCTCA TGGAGTCAAG TCTCTTCATC TCTACACATT
    GAACATGGAG AAATCTGCTC TTGCAATATT GATGAATCTT GGTATGATTG
    ATGAGTCCAA AATTTCTCGT TCTTTACCCT GGAGACGCCC TGCAAATGTT
    TTCCGTACTA AGGAAGATGT GCGCCCCATT TTCTGGGCAA ACCGTCCAAA
    GAGCTACATT TCTAGAACCA AGGGCTGGGA AGATTTCCCA CAAGGCCGGT
    GGGGTGATTC ACGCAGTGCT TCATATGGTG CACTCTCGGA TCATCAGTTC
    TCACGTCCGC GAGCACGTGA CAAGAAGCTT CAACAAGAAT GGGTTGTCCC
    ACTGAAAAGT GTTGAAGATA TTCAGGAGAA ATTCAAGGAG CTCTGCCTTG
    GAAACCTTAA AAGCAGTCCC TGGTCTGAAT TAGATGGACT CCAGCCAGAG
    ACAAGGATAA TAAACGAGCA ACTGATAAAA GTCAACTCCA AAGGCTTCTT
    GACCATCAAT AGCCAACCAT CAGTCAACGC CGAGAGATCT GATTCCCCAA
    CTGTTGGATG GGGAGGTCCT GTTGGATATG TATACCAAAA GGCTTATCTA
    GAGTTCTTCT GCTCAAAGGA GAAATTAGAT GCAGTGGTGG AGAAATGCAA
    AGCTTTGCCA TCGATTACTT ACATGGCTGT GAACAAAGGA GAACAGTGGG
    TATCGAACAC TGCCCAAGCT GATGTGAATG CTGTAACTTG GGGAGTTTTC
    CCGGCTAAGG AAATCATTCA ACCAACCATT GTCGATCCCG CTAGCTTCAA
    CGTCTGGAAG GATGAAGCAT TTGAGACTTG GTCAAGAAGC TGGGCTAACT
    TGTACCCAGA AGCCGACCCT TCCAGAAACT TGCTCGAGGA GGTGAAGAAC
    AGCTACTATT TGGTAAGCTT GGTGGAGAAC GATTACATCA ATGGTGACAT
    ATTCGCGGTG TTTGCTGATC TTTGAGAAAA TCAAGAGACA ACTACAGTAT
    ATCGGTTTCC TACTGCTTTC AAGATTTGCT TTTGTACTTT CTCTAAAATA
    TTGGGATTTT GTTTTCT

    Gene models with high sequence identity

    1. AT2G44160.1 [+] show detail - methylenetetrahydrofolate reductase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Eukaryotic-type methylenetetrahydrofolate reductase 2e-238
    Gene3D no description 3.3e-97
    HMMPfam Methylenetetrahydrofolate reductase 4.6e-127
    superfamily FAD-linked oxidoreductase 1.4e-95
    HMMPanther METHYLENETETRAHYDROFOLATE REDUCTASE 2.6e-215
    HMMPanther METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRA 2.6e-215

    See the detailed result >

    AT2G44160.1

    Model type
    Protein coding
    Short Description
    methylenetetrahydrofolate reductase 2
    Curator Summary
    methylenetetrahydrofolate reductase MTHFR2 mRNA, complete
    Computational Description
    methylenetetrahydrofolate reductase 2 (MTHFR2); FUNCTIONS IN: methylenetetrahydrofolate reductase (NADPH) activity; INVOLVED IN: oxidation reduction, methionine metabolic process; EXPRESSED IN: male gametophyte, guard cell, cultured cell, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Methylenetetrahydrofolate reductase (InterPro:IPR003171), Eukaryotic-type methylenetetrahydrofolate reductase (InterPro:IPR004621); BEST Arabidopsis thaliana protein match is: methylenetetrahydrofolate reductase 1 (TAIR:AT3G59970.3); Has 4605 Blast hits to 4574 proteins in 1845 species: Archae - 16; Bacteria - 3444; Metazoa - 135; Fungi - 300; Plants - 75; Viruses - 0; Other Eukaryotes - 635 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR