F29927

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29927

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29927

Determination of introduced cDNA(s)

  • RAFL09-42-D13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-42-D13 - Resource: pda09763

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-42-D13 - full reading 
    ACAAGTTTGT CGGATCAATC CATTTTAACT CCGATCCATG ACTACGACTA 
    GGCGGAAAAA TACACATTGG TGTCATACTT GTAGACGAGG AATCCATCTT 
    CAAGGAGAAG GCAGAAGAGA AGGAGCTTGC ATTTACTGTG GTAACACCTT 
    TCTTGAAAGG CTATATGAGA ATGTTGAACT AAGCCCTTTT GATTTATTCG 
    GATTAGCCTA CGAAGAAGCT CGTAACCGTC GCAACAACAG AAGATCGGTT 
    ATAGGAGAAC AACTAAGTTT TGAAGAGTTG TTTAACCGGC TCCCAGCACT 
    ACAAGACCGT CGTGGTCCTC CTCCAGCATC ACTAGCCGCG ATTAACTCAT 
    TGCAAAAGAT CAAAATCAGG CAGAAGCATC TCGGTTTAGA TCCCTATTGT 
    CCGGTTTGCC AAGACCAGTT TGAAATCGGA TCAGATGCAA GAAAAATGCC 
    GTGTAAACAT ATCTACCATT CTGAATGTAT ACTCCCGTGG TTAGTCCAGC 
    GTAATACTTG CCCCGTCTGC CGCAAAGAAC TTCCACAAGA CCGAAATAAT 
    AGCCGGAAAA ATCCATTGTG GCATCTGTGG CCGTTCAGGT CCTCTGGTTT 
    GGCCTCAAAC CATAATGGAT CATCACCTTT CCATTGAGAT GCTAGCTTTT 
    GAATCAATCC ATGTGCATGT ACGTAGTATA TGATGATATT TTATTTTTCC 
    ATGATAAAAT GTTGCTTTTT TCAATATATT GGCATGTACA AAAGGGTTTT 
    GTAGTCTTAT TAATGTATGA AAAATATTGT TTATCT

    Gene models with high sequence identity

    1. AT3G10815.1 [+] show detail - RING/U-box superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, RING-type 6.4e-07
    HMMPfam Zinc finger, C3HC4 RING-type 2.4e-07
    Gene3D no description 1e-12
    superfamily RING/U-box 2.6e-15
    ProfileScan Zinc finger, RING-type 12.091
    HMMPanther RING ZINC FINGER PROTEIN 6.4e-40

    See the detailed result >

    AT3G10815.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger C1A (TAIR:AT2G40830.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR