F30006

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30006

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30006

Determination of introduced cDNA(s)

  • RAFL09-70-L01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-70-L01 - Resource: pda06726

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-70-L01 - full reading 
    AATTAGCTCA TTCTTGCCTC CAAACAAATA TTCCTGACAG ACCAGACCAC 
    TCGTAAGACA GACCAAACCC TAAACTAAAA GCATCCACGT TCTTTGTTTT 
    TGTATTGATG GTCTGATCTC ATATCCATGG AGATGGAGAA TCACCGCCCC 
    GGCAGTTTCA CCTACATGGG CCGCAAATTC AGCGATTTAA GTCTCAACGA 
    TGACTCCTCT GCTTTCAGCG ATTGTAACAG CGACAGATCC GGCGAATTCC 
    CCACTGCTTC CTCCGAGAGC CGTCGTCTCC TCCTCTCTTG CGCCTCTGAG 
    AATTCCGATG ATCTCATCAA TCATCTCGTG TCGCATCTTG ATTCCTCCTA 
    TTCGATCGAT GAGCAGAAGC AAGCTGCTAT GGAGATCAGG CTCTTATCCA 
    AGAACAAACC TGAGAATCGG ATCAAAATCG CCAAGGCCGG TGCGATTAAG 
    CCGTTGATTT CTCTGATCTC TTCTTCGGAT CTTCAGCTTC AGGAGTATGG 
    TGTCACTGCA ATCTTGAATC TATCTCTCTG CGACGAGAAC AAAGAGTCGA 
    TTGCTTCTTC CGGTGCGATT AAGCCGCTTG TCAGGGCTTT GAAAATGGGA 
    ACACCGACTG CTAAAGAGAA CGCTGCTTGT GCTCTGCTCC GTCTATCGCA 
    GATCGAGGAG AACAAAGTCG CCATCGGGAG ATCCGGAGCG ATTCCTCTGT 
    TGGTGAACCT TCTAGAAACA GGCGGATTCA GAGCGAAGAA GGACGCGTCG 
    ACGGCTCTGT ACTCGTTGTG CTCAGCTAAA GAGAACAAAA TCAGAGCCGT 
    GCAATCGGGA ATTATGAAGC CGCTTGTTGA ATTGATGGCG GATTTCGGAT 
    CAAACATGGT GGATAAATCG GCGTTTGTGA TGAGTCTGTT AATGTCGGTG 
    CCGGAATCGA AACCGGCGAT TGTGGAGGAA GGAGGAGTTC CGGTGCTGGT 
    GGAGATAGTA GAGGTGGGAA CACAGAGACA GAAAGAGATG GCTGTGTCGA 
    TATTGCTACA GCTTTGTGAG GAGAGTGTTG TGTATAGAAC AATGGTGGCT 
    AGAGAAGGAG CGATACCTCC GCTAGTGGCT CTGTCGCAGG CAGGAACAAG 
    TCGAGCTAAG CAAAAGGCTG AGGCGTTGAT TGAGCTTCTA AGGCAACTAA 
    GATCCATTAG TAATGGTGGT GCTAGATCAT CGTCCCAACT CTGATGTGAG 
    CTTTTCTTAT TTATCTTTTT TTACCACACT CTTTCTTCGT CTTTTACTGT 
    TAATGCGAGG GTGTATACAA ACAACCAGAA AAAAAAGGGG GGAAAAGGAA 
    ACTGTAAATA GTTTGTGTAG AAAATTAGTG GGCTTGTTGT AATTTATCTT 
    GAGTTTGGCT TTTCTTTTCT TTTTGTGATC CATTTCATAA ATTTCGGTTT 
    GGTTTTAACA GATTTCTCAT TCC

    Gene models with high sequence identity

    1. AT3G01400.1 [+] show detail - ARM repeat superfamily protein
      E-value: 0; Score: 99.93

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Armadillo-type fold 3.3e-57
    HMMSmart Armadillo 0.00045
    HMMSmart Armadillo 0.0038
    HMMSmart Armadillo 1.4
    HMMSmart Armadillo 47
    HMMSmart Armadillo 18
    HMMSmart Armadillo 120
    HMMPfam Armadillo 2.4e-07
    HMMPfam Armadillo 4.8e-06
    HMMPfam Armadillo 1e-05
    ProfileScan Armadillo 11.602
    ProfileScan Armadillo 8.662
    HMMPanther VACUOLAR PROTEIN 8-RELATED 1.9e-16
    HMMPanther BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAIN 1.9e-16
    Gene3D Armadillo-like helical 3.2e-56

    See the detailed result >

    AT3G01400.1

    Model type
    Protein coding
    Short Description
    ARM repeat superfamily protein
    Computational Description
    ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G58680.1); Has 6122 Blast hits to 3580 proteins in 271 species: Archae - 0; Bacteria - 2; Metazoa - 1843; Fungi - 536; Plants - 3048; Viruses - 0; Other Eukaryotes - 693 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR