F30120

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30120

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30120

Determination of introduced cDNA(s)

  • RAFL06-09-H15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-09-H15 - Resource: pda02943

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-09-H15 - full reading 
    CCATCAAAAT CCTCCGACGA TGACAACCAT AGCTGCAGCT GGCCTCAACG 
    TCGCGACTCC ACGAGTGGTC GTTCGACCTG TGGCTCGTGT ATTAGGTCCG 
    GTCCGGTTGA ATTACCCGTG GAAATTCGGT TCGATGAAGC GGATGGTTGT 
    GGTTAAGGCT ACATCGGAAG GAGAGATATC GGAGAAGGTG GAGAAGAGTA 
    TACAAGAAGC TAAGGAGACA TGCGCTGATG ATCCGGTGAG CGGGGAGTGT 
    GTAGCGGCTT GGGACGAGGT GGAGGAGCTG AGTGCGGCGG CGAGTCATGC 
    TAGGGACAAG AAGAAAGCTG GTGGCTCCGA TCCTTTGGAA GAGTATTGCA 
    ATGATAATCC TGAGACTGAT GAGTGTCGTA CTTATGATAA TTAAAAAATA 
    TGTTTTTGAT GTTCGAATTA TGAAACTTTA GGTATGGATC AATGTTTGTT 
    CTTCTTGTCC CTTGTTGTTA TGTTTGTGTT TTTGGTTTGG TTGATGATTG 
    TAATGTGATA AATGAATATG AATAGTACAA TACACAACAT ATGTTTCAT

    Gene models with high sequence identity

    1. AT2G47400.1 [+] show detail - CP12 domain-containing protein 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G47400.1

    Model type
    Protein coding
    Short Description
    CP12 domain-containing protein 1
    Curator Summary
    CP12-1 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle.
    Computational Description
    CP12 domain-containing protein 1 (CP12-1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: negative regulation of reductive pentose-phosphate cycle; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function CP12 (InterPro:IPR003823); BEST Arabidopsis thaliana protein match is: CP12 domain-containing protein 2 (TAIR:AT3G62410.1); Has 264 Blast hits to 264 proteins in 70 species: Archae - 0; Bacteria - 128; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR