F30122

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30122

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F30122

Determination of introduced cDNA(s)

  • RAFL17-08-M12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL17-08-M12 - Resource: pda10504

    full reading [+] show sequence

    Nucleotide sequence: RAFL17-08-M12 - full reading 
    AAAAAAGGAC AAATCTTGAT ATTGCTTTGA TTGCTGTTGT GTATGTATGT 
    GTTTTTATAG TGAGAGAAGA AAAAAAAGCA CAATCTTTGA ATGGACTGGA 
    ATTTCAAACT TAGCTCTGGT TATTTATCTG GATTCGATCA AGAACCAGAT 
    TTATCACCAA TGGATGGTTC GATCTCGTTT GGTGGGTCGT CACAGTCAAA 
    AGCGGATTTT TCATTTGATC TAAAACTTGG AAGAAACATT GGAAACTCTT 
    CCTCTGTTTT TGGTGATACA GAGCAAGTGA TTAGTCTTAG TAAGTGGAAA 
    GATAGTGCTT TAGCTAAACC AGAAGGTTCA AGAAGCTCGA GTTCAAAGAG 
    AACAAGAGGG AATGGTGTTG GAACCAACCA GATGCCGATT TGTCTTGTTG 
    ATGGATGTGA TTCTGATTTT AGTAATTGTA GAGAGTATCA TAAGAGACAT 
    AAAGTTTGTG ATGTTCATTC AAAAACTCCT GTGGTTACTA TTAATGGTCA 
    TAAACAGAGG TTTTGTCAAC AATGCAGCAG GTTTCATGCT TTGGAGGAGT 
    TTGATGAAGG GAAGAGAAGT TGTAGGAAAC GTCTTGATGG ACATAATCGA 
    AGACGACGGA AGCCGCAGCC TGAACATATC GGTCGTCCTG CCAACTTCTT 
    TACGGGTTTT CAAGGTAGCA AATTGCTAGA GTTTTCTGGT GGTTCACATG 
    TGTTTCCAAC TACATCTGTG TTGAACCCGA GCTGGGGAAA TAGTCTTGTA 
    AGCGTTGCTG TAGCCGCCAA TGGTTCGAGT TATGGGCAGA GCCAGAGCTA 
    TGTTGTTGGT TCTTCTCCTG CAAAGACAGG GATAATGTTT CCAATCTCTT 
    CTTCTCCAAA CAGTACCAGA AGCATAGCAA AACAATTCCC TTTCTTGCAA 
    GAAGAAGAAA GCTCGAGAAC CGCATCGTTG TGTGAGAGAA TGACGAGTTG 
    CATCCATGAC TCTGATTGTG CTCTCTCTCT TCTGTCATCC TCCTCGTCGT 
    CAGTCCCTCA TTTGCTTCAA CCACCACTTT CTTTGTCCCA AGAAGCAGTT 
    GAGACAGTTT TTTACGGGTC GGGATTGTTT GAGAATGCGA GTGCAGTCTC 
    TGATGGATCG GTTATATCCG GTAACGAGGC TGTCCGTCTT CCGCAGACAT 
    TCCCGTTTCA TTGGGAGTAG TAGAAGAAGA AGTAGGTAGA TAGATAGAAT 
    CAGAAAGATC TATTTGTGTC TCTTCTCTTC TCCCTCATTT TTCAATGTTC 
    TTTATCATCA TCATTGTTCT TGTTAACACT ACAAGAAATA TGGACATTCT 
    TAACACACCG AAAACGCTAT AATAACGTTT ACATAGCGGA TTCATAAACG 
    CTGTGTTTGC CGG

    Gene models with high sequence identity

    1. AT5G50570.2 [+] show detail - Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Transcription factor, SBP-box 2.2e-41
    HMMPfam Transcription factor, SBP-box 6.1e-39
    Gene3D Transcription factor, SBP-box 2.8e-25
    ProfileScan Transcription factor, SBP-box 31.915

    See the detailed result >

    AT5G50570.2

    Model type
    Protein coding
    Short Description
    Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
    Computational Description
    Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (TAIR:AT5G50670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR