F30138

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30138

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
T2  
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30138

Determination of introduced cDNA(s)

  • RAFL05-09-N08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-09-N08 - Resource: pda01083

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-09-N08 - full reading
    CTCTCTTTTT GCTATTATAA AGAAAAAGAT TCATTCTCCC ACCATTGAGG 
    TTTAACTTAT ACAAACAGAT CTTTTTGAAA TTGGATTCAT CTAAGAAGCA
    GACTCTGTTT TCATGGCTGT TTACAATACC AAACTCTGTT TGGCCTCTGT
    TTTCTTGCTC TTAGGGCTTC TCTTGGCTTT TGACTTGAAG GGTATAGAAG
    CAGAAAGTCT TACCAAACAG AAACTGGACT CGAAGATACT TCAGGATGAG
    ATTGTGAAGA AAGTCAACGA AAACCCAAAC GCTGGATGGA AAGCTGCTAT
    AAATGATCGA TTTTCAAACG CCACTGTTGC AGAGTTTAAG CGTCTTCTCG
    GTGTTAAACC AACACCAAAG AAGCATTTCT TAGGTGTTCC TATTGTGAGC
    CATGATCCAT CTTTGAAGCT ACCTAAAGCT TTTGATGCTA GAACTGCTTG
    GCCACAGTGC ACTAGTATTG GAAACATCTT AGATCAGGGA CATTGTGGTT
    CTTGCTGGGC ATTTGGTGCT GTTGAATCAC TATCAGATAG ATTCTGTATC
    CAATTTGGCA TGAACATTTC TTTATCAGTA AATGATCTCC TAGCTTGTTG
    TGGATTCCGT TGTGGTGATG GTTGTGACGG TGGCTATCCA ATTGCTGCTT
    GGCAATACTT TTCGTATAGC GGTGTTGTCA CAGAAGAGTG TGATCCATAC
    TTTGATAATA CCGGATGCTC TCACCCGGGT TGCGAACCGG CATATCCTAC
    ACCGAAATGT TCGAGGAAAT GCGTTAGCGA CAACAAACTA TGGAGCGAGT
    CGAAGCATTA CAGTGTTAGT ACATACACTG TGAAATCTAA TCCACAAGAT
    ATCATGGCAG AGGTTTATAA GAATGGACCT GTTGAAGTCT CTTTTACCGT
    TTATGAGGAT TTTGCTCATT ACAAATCTGG AGTCTATAAG CACATAACAG
    GTTCTAACAT TGGAGGTCAT GCTGTTAAAC TTATTGGTTG GGGAACTAGC
    AGTGAAGGAG AAGATTATTG GTTGATGGCA AATCAATGGA ACAGAGGCTG
    GGGTGATGAT GGTTATTTCA TGATAAGGAG AGGAACTAAT GAATGTGGAA
    TTGAAGATGA ACCAGTAGCT GGTTTGCCTT CAAGCAAGAA TGTGTTTAGG
    GTTGATACCG GTTCGAATGA TCTTCCGGTT GCATCGGTTT AAGATCAAAG
    ATGGAAATGT TGCATCGGTT TAATATCAAA GATGAAAAGT TGTTTGTAAG
    ATATATATGT TATGGTTGTT GTTTCCAGTA AAAGATTCCG GTGACTAGAA
    ATTGTTTTCT GGTTGGCTGT GAAAATGTTA TACAAATAAA CACTTCAACT
    TAAGCAATAT AATATCATTT CTACTAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT4G01610.1 [+] show detail - Cysteine proteinases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Peptidase C1A, papain C-terminal 4e-66
    HMMPfam Peptidase C1A, propeptide 7.3e-15
    HMMPanther Peptidase C1A, cathepsin B 3.7e-198
    HMMPanther Peptidase C1A, papain 3.7e-198
    Gene3D no description 1.4e-90
    PatternScan Peptidase, cysteine peptidase active site 0
    PatternScan Peptidase, cysteine peptidase active site 0
    FPrintScan Peptidase C1A, papain C-terminal 4.9e-08
    FPrintScan Peptidase C1A, papain C-terminal 4.9e-08
    FPrintScan Peptidase C1A, papain C-terminal 4.9e-08
    HMMSmart Peptidase C1A, papain C-terminal 1.3e-87
    superfamily Cysteine proteinases 3.6e-102

    See the detailed result >

    AT4G01610.1

    Model type
    Protein coding
    Short Description
    Cysteine proteinases superfamily protein
    Computational Description
    Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G02305.1); Has 7486 Blast hits to 7443 proteins in 692 species: Archae - 63; Bacteria - 158; Metazoa - 3254; Fungi - 4; Plants - 1745; Viruses - 146; Other Eukaryotes - 2116 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR