F30215

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30215

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30215

Determination of introduced cDNA(s)

  • RAFL09-90-E16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-90-E16 - Resource: pda06948

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-90-E16 - full reading 
    GGACAAAAAA AATCAAGAAG AAAAAATGCA GAAGACATTG CTCTCATGTC 
    TCATCACGAC GCTCCTCCTA ATCACCGTCG CAGATTCCAT GAAAGACACC 
    TCGGTGCGGC TAAAATTAGC GCACAGGGAC ACTCTCTTGC CGAAACCTCT 
    CAGCCGCATT GAGGACGTTA TCGGCGCCGA CCAGAAGCGT CATAGTTTGA 
    TATCTCGGAA GCGTAACTCC ACAGTAGGAG TGAAAATGGA TTTGGGATCA 
    GGGATTGATT ACGGAACGGC GCAGTATTTC ACGGAGATTA GAGTTGGAAC 
    TCCGGCGAAG AAGTTCAGAG TGGTGGTTGA TACAGGAAGC GAGCTTACTT 
    GGGTGAATTG TAGATACCGT GCGAGAGGCA AAGACAATCG GAGAGTGTTT 
    AGAGCTGACG AATCAAAGAG CTTTAAGACC GTTGGATGTT TAACTCAGAC 
    TTGTAAAGTT GATCTGATGA ATCTCTTCTC ACTCACTACT TGTCCTACTC 
    CTTCCACTCC TTGCTCCTAT GATTACAGAT ATGCAGATGG GTCAGCAGCA 
    CAAGGCGTAT TCGCAAAGGA GACTATCACA GTTGGTCTCA CTAATGGTCG 
    TATGGCTAGA CTCCCTGGTC ACCTCATTGG TTGTAGTAGT TCCTTTACAG 
    GACAGAGCTT CCAAGGAGCC GATGGGGTTC TTGGTTTAGC CTTTAGCGAT 
    TTCTCCTTCA CTTCCACAGC CACTAGTCTC TATGGTGCCA AATTTTCATA 
    CTGCCTTGTT GACCATCTTT CCAACAAAAA CGTCTCCAAC TATCTCATCT 
    TCGGCTCCTC CAGATCCACC AAAACCGCCT TCCGACGAAC CACTCCGCTT 
    GATCTCACTC GCATCCCACC CTTCTACGCA ATCAACGTCA TTGGAATCTC 
    CCTCGGATAC GACATGCTTG ATATCCCCTC GCAAGTATGG GACGCAACTT 
    CCGGTGGTGG GACTATCTTA GACTCTGGAA CCAGCCTCAC GTTATTGGCT 
    GACGCCGCGT ACAAACAGGT GGTTACAGGG CTCGCACGCT ACCTTGTTGA 
    GTTGAAAAGA GTCAAACCAG AAGGAGTACC AATAGAGTAC TGTTTTAGTT 
    TCACTTCCGG ATTTAACGTG AGCAAGTTAC CGCAGCTGAC ATTTCATTTA 
    AAAGGCGGTG CACGATTTGA GCCACATCGT AAAAGTTACC TAGTAGATGC 
    AGCGCCTGGA GTCAAGTGTT TAGGATTTGT GTCGGCTGGA ACGCCGGCGA 
    CTAATGTGAT CGGTAATATA ATGCAGCAGA ATTATTTGTG GGAGTTTGAT 
    CTCATGGCCT CAACTTTGTC TTTTGCTCCC TCTGCTTGCA CTTAGCTGTC 
    TTGTCCATCT CTCGTGTTTA TTATTATTGA TTTGTTCGAA TATTTATTGT 
    TTGCTAGTGA ATGAATAAAA AACATGTTTG TTAGTGAAAA AAAAAAAAAA 
    AA

    Gene models with high sequence identity

    1. AT3G12700.1 [+] show detail - Eukaryotic aspartyl protease family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Peptidase aspartic, active site 0
    FPrintScan Peptidase A1 2.3e-08
    FPrintScan Peptidase A1 2.3e-08
    FPrintScan Peptidase A1 2.3e-08
    Gene3D Peptidase aspartic, catalytic 1.4e-21
    Gene3D Peptidase aspartic, catalytic 2.9e-37
    HMMPfam Peptidase A1 5.2e-23
    HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 2.2e-97
    HMMPanther Peptidase A1 2.2e-97
    superfamily Peptidase aspartic 3.3e-85

    See the detailed result >

    AT3G12700.1

    Model type
    Protein coding
    Short Description
    Eukaryotic aspartyl protease family protein
    Computational Description
    Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G25700.1); Has 3537 Blast hits to 3526 proteins in 338 species: Archae - 0; Bacteria - 0; Metazoa - 933; Fungi - 442; Plants - 1963; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR