F30228

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30228

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30228

Determination of introduced cDNA(s)

  • RAFL09-83-C08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-83-C08 - Resource: pda08893

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-83-C08 - full reading 
    TNTTCGACAC TTTTCACTGA TCTATTCACT CACTCAAATC GCCGCCGGAG 
    CTAAATCAAT CAACAATGAC GTCGACCTAC ACGAGATTCG ATACCGTATT 
    TCTCTTTTCT AGGTTCGCCG GCGCTAAGTA TTCGCCGTTA TTGCCGTCTC 
    CGTCGTTTAC TTTATCTACT TCCGGCATTC ATATCAGAAC CAAACCGAAT 
    TCTCGTTTTC ACTCGATTAT AGCATCCTCC TCATCTTCAT CTGTAGTCGC 
    CGGAACTGAT AGCATTGAGA TTAAATCGTT GCCGACGAAG CCTATTGAAG 
    GACAAAAGAC TGGAACTAGC GGACTCCGGA AGAAGGTGAA AGTTTTCATG 
    GAAGATAATT ATTTAGCCAA CTGGATTCAG GCATTGTTTA ATTCATTGCC 
    ACTTGAGGAT TATAAGAATG CAACGTTGGT TTTAGGAGGT GATGGTCGTT 
    ACTTTAACAA AGAAGCTTCA CAGATCATTA TCAAAATTGC TGCTGGGAAT 
    GGAGTTGGAC AAATTTTAGT TGGAAAGGAA GGCATTTTGT CAACCCCAGC 
    GGTTTCCGCT GTAATCAGGA AAAGAAAGGC AAATGGAGGA TTCATTATGA 
    GTGCAAGCCA TAATCCTGGT GGACCTGAAT ATGACTGGGG TATCAAGTTC 
    AATTACAGCA GTGGTCAGCC TGCTCCTGAA ACCATTACTG ACAAAATATA 
    TGGAAATACA CTTTCAATCT CTGAGATTAA GGTGGCAGAG ATTCCTGATA 
    TTGATCTTTC TCAAGTTGGA GTGACCAAAT ATGGGAATTT CAGTGTAGAA 
    GTTATAGATC CTGTTTCCGA CTATTTGGAG CTCATGGAGG ATGTTTTCGA 
    CTTTGATCTC ATCAGAGGTC TTCTTTCAAG ATCAGATTTT GGGTTCATGT 
    TTGATGCCAT GCATGCTGTT ACTGGTGCTT ATGCGAAACC AATTTTTGTC 
    GACAATCTTG GAGCCAAACC GGATTCAATT TCCAACGGAG TTCCCCTGGA 
    AGATTTTGGG CATGGCCATC CTGATCCTAA TTTGACATAT GCAAAGGATT 
    TGGTTGATGT CATGTATCGT GACAATGGAC CGGATTTCGG AGCAGCAAGT 
    GATGGTGATG GTGACAGAAA TATGGTTTTA GGAAACAAAT TCTTTGTCAC 
    TCCTTCAGAC TCTGTAGCTA TCATCGCAGC CAATGCACAA GAAGCAATTC 
    CATATTTCCG TGCTGGTCCT AAGGGGCTGG CACGTTCTAT GCCGACAAGT 
    GGTGCTCTTG ATCGTGTTGC CGAGAAGTTG AAGCTTCCTT TCTTCGAGGT 
    TCCCACTGGA TGGAAATTTT TTGGAAATCT TATGGATGCT GGAAAATTGT 
    CAATCTGTGG AGAAGAGAGC TTTGGCACAG GTTCTGATCA CATCCGTGAG 
    AAGGATGGAA TATGGGCTGT GTTGGCGTGG CTTTCGATCC TTGCTCATCG 
    CAACAAGGAC ACGAAACCAG GGGACAAGTT GGTGTCTGTT GCAGATGTTG 
    TGAAAGAGTA TTGGGCGACA TACGGAAGGA ACTTTTTTTC AAGATACGAC 
    TATGAAGAAT GTGAATCTGA AGGAGCCAAT AAAATGATCG AGTATCTTAG 
    AGAAATCTTG TCTAAGAGCA AGGCCGGTGA CGTTTATGGA AACTATGTCC 
    TCCAGTTTGC AGATGACTTC TCATACACAG ACCCTGTTGA TGGAAGTGTT 
    GCATCCAAGC AAGGTGTTCG GTTTGTGTTC ACGGATGGAT CCAGAATCAT 
    ATTTCGTTTA TCCGGAACTG GCTCAGCTGG AGCTACAGTG CGAATATACA 
    TTGAACAATT TGAGCCAGAC GTTTCAAAAC ATGATGTGGA TGCACAAATA 
    GCTCTTAAAC CTTTAATCGA TCTTGCATTG TCTGTATCAA AGCTGAAGGA 
    CTTCACAGGG AGGGAGAAGC CCACTGTCAT TACATGAAGA GAAGTGTCAC 
    ATGGTCCTTT CGATAAGGCA ATTTGGGTTC CTGACTTCAG TTTTGTCTGC 
    CATGTTTATT TGAAAATTCC AGAGCAATGA AATGCTTATC CTTGTAACAT 
    ATATAACTTA TATACGTCTT TCTATATAAA TAAAAGCATT TCTTTT

    Gene models with high sequence identity

    1. AT5G51820.1 [+] show detail - phosphoglucomutase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Alpha-D-phosphohexomutase, conserved site 0
    HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain I 5.6e-35
    HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain III 8.2e-27
    HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain II 5.7e-12
    HMMPfam Alpha-D-phosphohexomutase, C-terminal 1.4e-10
    Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 3e-56
    Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 1.5e-39
    Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 3e-38
    Gene3D no description 3.2e-60
    superfamily Phosphoglucomutase, C-terminal domain 5.2e-53
    superfamily Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 4.6e-51
    superfamily Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 1.4e-39
    HMMPanther PHOSPHOGLUCOMUTASE 1.1e-215
    HMMPanther PHOSPHOHEXOMUTASE FAMILY MEMBER 1.1e-215
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 5.6e-20
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 5.6e-20
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 5.6e-20
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 5.6e-20

    See the detailed result >

    AT5G51820.1

    Model type
    Protein coding
    Short Description
    phosphoglucomutase
    Curator Summary
    Encodes a plastid isoform of the enzyme phosphoglucomutase involved in controlling photosynthetic carbon flow. Effective petiole movement against the direction of the gravity requires functional PGM activity that is required for full development of amyloplasts.
    Computational Description
    phosphoglucomutase (PGM); FUNCTIONS IN: phosphoglucomutase activity; INVOLVED IN: response to cold, starch biosynthetic process, detection of gravity, carbohydrate metabolic process; LOCATED IN: apoplast, stromule, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, C-terminal (InterPro:IPR005843), Alpha-D-phosphohexomutase, conserved site (InterPro:IPR016066), Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (InterPro:IPR016055), Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: Phosphoglucomutase/phosphomannomutase family protein (TAIR:AT1G70730.3); Has 12307 Blast hits to 12296 proteins in 2800 species: Archae - 231; Bacteria - 9586; Metazoa - 483; Fungi - 211; Plants - 168; Viruses - 0; Other Eukaryotes - 1628 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR