F30247

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30247

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30247

Determination of introduced cDNA(s)

  • RAFL06-78-M22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-78-M22 - Resource: pda03750

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-78-M22 - full reading 
    ACGCTCTCTC ACTGATCATT CACAATCTCT CTCTTTTTTT CACCGGCGAT 
    AATTTTCCGA TCTCGATTAT AAGATGGCGA AGGAACCAGT TCGTGTTCTT 
    GTTACCGGAG CTGCAGGACA AATCGGATAT GCTCTTGTTC CTATGATTGC 
    AAGGGGGATA ATGCTTGGTG CTGATCAGCC TGTGATCCTC CACATGCTTG 
    ACATCCCTTT TGCAGCAGAA GCTTTGAACG GTGTGAAGAT GGAATTGGTC 
    GATGCTGCTT TCCCTCTTCT AAAGGGTGTG GTGGCTACAA CTGATGCTGT 
    TGAAGCGTGT ACCGGTGTTA ATGTTGCTGT CATGGTTGGT GGTTTCCCGA 
    GGAAGGAAGG AATGGAGAGG AAGGATGTTA TGTCCAAGAA CGTTTCCATT 
    TACAAGTCTC AAGCTTCTGC CTTGGAGAAG CATGCTGCAC CAAACTGCAA 
    GGTTCTGGTT GTTGCAAACC CTGCAAACAC CAATGCATTG ATCCTGAAGG 
    AATTTGCACC ATCGATCCCA GAGAAGAACA TTACTTGCTT GACCAGGCTT 
    GACCACAACA GGGCATTGGG ACAAGTGTCT GAGAGGTTAA GCGTACCAGT 
    GTCTGATGTG AAGAACGTGA TTATCTGGGG AAACCACTCA TCAACCCAAT 
    ACCCAGATGT CAACCACGCT ACCGTTAAGA CTTCCGTTGG AGAGAAGCCA 
    GTGCGTGAGC TAGTCAAGAA TGACGAGTGG TTGAATGGAG AGTTCATCTC 
    TACCGTTCAA CAACGTGGTG CTGCCATTAT CAAGGCCAGG AAGCTGTCTA 
    GTGCACTTTC TGCAGCTAGC TCAGCTTGTG ACCATATCCG TGATTGGGTT 
    GTTGGAACAC CTGAGGGCAC ATTTGTTTCA ATGGGAGTAT ACTCAGATGG 
    ATCCTACAAT GTTCCAGCTG GACTTATCTA CTCCTTCCCC GTAACCTGCC 
    GTAATGGAGA GTGGACCATT GTTCAAGGTT TACCGATTGA TGACGCATCG 
    AGGAAGAAGA TGGATTTGAC AGCAGAGGAG TTGAAGGAAG AGAAGGACCT 
    CGCTTACTCA TGCCTCTCTT AAACCGGTCT TTTCTCAGCT GGTTTAATCA 
    GTGAAAGCTT TGTTTCGAAT AAAGAAGTTT TGTTATAAAA TGAACTTTTA 
    ATAACCTCAT GAGCTTGAGG TTTAGTTTTC CGAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT5G43330.1 [+] show detail - Lactate/malate dehydrogenase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR L-lactate/malate dehydrogenase 1.1e-58
    HMMPanther Malate dehydrogenase, NAD/NADP 9e-131
    HMMTigr Malate dehydrogenase, NAD/NADP 3.4e-246
    HMMTigr Malate dehydrogenase, NAD-dependent, cytosolic 1.2e-282
    superfamily Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 6.1e-60
    superfamily NAD(P)-binding domain 1.1e-43
    HMMPfam Lactate/malate dehydrogenase, C-terminal 3.5e-41
    HMMPfam Lactate/malate dehydrogenase, N-terminal 1.4e-33
    PatternScan Malate dehydrogenase, active site 0
    Gene3D NAD(P)-binding domain 7.9e-52
    Gene3D Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 8e-71

    See the detailed result >

    AT5G43330.1

    Model type
    Protein coding
    Short Description
    Lactate/malate dehydrogenase family protein
    Computational Description
    Lactate/malate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: in 6 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, cytosolic (InterPro:IPR011274), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, NAD/NADP (InterPro:IPR010945), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT1G04410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR