F30312

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30312

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30312

Determination of introduced cDNA(s)

  • RAFL04-20-P19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-20-P19 - Resource: pda02400

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-20-P19 - full reading 
    ATCTTCTCCG TTAAACCCAT TTAAATAGTT TTCATTGTCC TTGTGAAAAA 
    TGCAATTCTC TTCATCTTCT ATTACTTCTT TCACTTGGAC AGTTTTAATC 
    ACAGTGGGAT GTCTTATGCT TTGTGCGTCT TTCTCCGATG CTCAACTTAC 
    CCCTACTTTT TACGACACTT CATGTCCTAC CGTCACCAAC ATTGTAAGAG 
    ATACCATTGT CAACGAGCTA AGATCGGACC CTCGTATCGC CGGGAGCATC 
    CTTCGTCTTC ACTTCCATGA CTGCTTTGTT AATGGTTGTG ATGCTTCGAT 
    CTTGTTAGAC AACACGACAT CATTTCGAAC AGAGAAAGAT GCACTTGGAA 
    ATGCAAATTC AGCCCGAGGA TTTCCAGTGA TTGATAGAAT GAAAGCTGCG 
    GTGGAGAGGG CATGCCCAAG AACCGTTTCA TGCGCAGATA TGCTCACCAT 
    TGCTGCTCAA CAATCTGTCA CTTTGGCAGG AGGTCCTTCT TGGAAGGTTC 
    CTTTAGGGAG AAGAGACAGC TTACAAGCAT TTCTAGATCT TGCTAACGCA 
    AATCTTCCAG CTCCATTCTT CACACTTCCA CAGCTTAAAG CCAACTTCAA 
    AAATGTTGGC CTCGATCGTC CTTCTGATCT TGTTGCGCTC TCCGGGGCTC 
    ACACATTTGG TAAAAATCAA TGTCGATTCA TTATGGACAG ATTATACAAC 
    TTTAGCAACA CTGGATTACC TGACCCTACA CTCAACACTA CTTACCTCCA 
    AACTCTTCGT GGTCAATGTC CTCGCAATGG TAATCAAAGC GTCTTAGTGG 
    ATTTCGATCT GCGTACGCCT TTGGTTTTCG ACAACAAATA CTATGTGAAT 
    CTTAAAGAGC AAAAAGGTCT TATCCAGAGC GACCAAGAGT TGTTCTCTAG 
    CCCCAATGCC ACTGACACAA TCCCCTTGGT GAGAGCATAT GCTGATGGCA 
    CACAAACATT CTTCAATGCA TTCGTGGAGG CAATGAATAG GATGGGAAAT 
    ATTACACCAA CTACAGGAAC TCAAGGACAA ATCAGGTTGA ATTGTAGAGT 
    GGTGAACTCC AACTCTCTAC TCCATGATGT GGTGGATATC GTTGACTTTG 
    TAAGTTCTAT GTGAGAATAG TTGACTCAAT ATCTGGCGAC CAGACTATAT 
    GTTAAGATAA ATAAGCGGGA TCTCAAGTTG TTACTTGAGC AGGAGCAGAT 
    TGTATTGGTG TTTATAGTAT CCAAGTAGTT CTCTGTTTTT TTTTTATATT 
    GGCCTTTGAT AGCGTTTTGT TAATCGGTCT AAGCTTCTAT GGTTTTGGAC 
    TGTTTTATCC T

    Gene models with high sequence identity

    1. AT3G49110.1 [+] show detail - peroxidase CA
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Haem peroxidase, plant/fungal/bacterial 79.934
    HMMPfam Haem peroxidase, plant/fungal/bacterial 1.5e-70
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0
    superfamily Haem peroxidase 1.2e-112
    FPrintScan Plant peroxidase 5.8e-68
    FPrintScan Plant peroxidase 5.8e-68
    FPrintScan Plant peroxidase 5.8e-68
    FPrintScan Plant peroxidase 5.8e-68
    FPrintScan Plant peroxidase 5.8e-68
    FPrintScan Plant peroxidase 5.8e-68
    FPrintScan Plant peroxidase 5.8e-68
    FPrintScan Plant peroxidase 5.8e-68
    FPrintScan Plant peroxidase 5.8e-68
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.6e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.6e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.6e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.6e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.6e-33
    Gene3D no description 9.8e-61

    See the detailed result >

    AT3G49110.1

    Model type
    Protein coding
    Short Description
    peroxidase CA
    Curator Summary
    Class III peroxidase Perx33. Expressed in roots. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response.
    Computational Description
    peroxidase CA (PRXCA); FUNCTIONS IN: peroxidase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to light stimulus, defense response to bacterium, defense response to fungus, unidimensional cell growth; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: peroxidase CB (TAIR:AT3G49120.1); Has 4322 Blast hits to 4294 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 31; Plants - 4239; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR