F30321

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30321

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30321

Determination of introduced cDNA(s)

  • RAFL09-22-H23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-22-H23 - Resource: pda05632

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-22-H23 - full reading 
    AATTTCCACC GATCTTCTCC TCATAAAAAC ACCTCTTCCT CAACGAATTT 
    TTTATCCATG AGTCGCATAA TGGGATTGTT CGATCTCGAG AAACACTTCG 
    CCTTCTACGG TGCTTACCAT AGCAATCCGA TCAACATTCT AATCCACATC 
    ATCTTCGTTT GGCCAATCTT CTTCTCAGTT TTACTTCTCC TCCACTCGTC 
    GACCCCAATT TTCGACCCCT CTCAATTAGG GTTTTCTCAA TCGTTGACCC 
    TCGACGGCGT TTTGCGATTT AACGTTGGGT TTATATTCGC CTTGATTTAT 
    GCTCTGTTCT ATATCGGTTT GGATAAGAAA TCTGGATTTG TAGCTGCTCT 
    TATGTGTTTC TCTTGCTGGG TTGGTTCCAG TTTTCTTGCT GTTCGACTAG 
    GATCTTCTCT TGCCTTAAAG GTTGGGTTAG CATCTCAGCT GTTATGTTGG 
    ACCGGGCAGT TCGTTGGCCA TGGAGTATTC GAGAAACGGG CACCTGCGCT 
    GTTAGACAAT TTACTCCAAG CTTTTCTCAT GGCTCCTTTC TTCGTGTTGC 
    TCGAGGTTCT TCAATCGGTT TTCGGGTATG AACCATATCC CGGTTTTCAA 
    GCGCGTGTGA ATGCCAAGGT AGAAAGTGAC ATCAAGGAAT ATAGGGCAAA 
    GAAGCAGAAG AAGAATAAGA TCACATAAGC TTGGATTATA TATAACTGAA 
    GAACTTGAAC CCATTGTCGT GTTTCTATAA CCGAAATGAT AATAAGACCA 
    CCATGATCCA TGGATTGATG TATTTGTGTG TAAACTATGT TTCAATATAT 
    TGAATATAAT ATGTTTCAGC C

    Gene models with high sequence identity

    1. AT1G18720.1 [+] show detail - Protein of unknown function (DUF962)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam DUF962 2.9e-33

    See the detailed result >

    AT1G18720.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF962)
    Computational Description
    Protein of unknown function (DUF962); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF962 (InterPro:IPR009305); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF962) (TAIR:AT1G74440.1); Has 638 Blast hits to 636 proteins in 299 species: Archae - 0; Bacteria - 335; Metazoa - 3; Fungi - 143; Plants - 88; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR