F30328

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30328

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30328

Determination of introduced cDNA(s)

  • RAFL09-49-C16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-49-C16 - Resource: pda17756

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-49-C16 - full reading 
    GATCCCACAT CTCTACTCAT CCACATTAGT CAAAGATCTC TATTGGTACT 
    TCTCAAATGG ATCACAAAAT CCTACTAACA CCTCCCAAAT CTTTATACAC 
    CAAATGTATC ATAACCATCA TTTACGTCGT ATCAATATCT CATCTAAATG 
    CCCATTTCAT AACTTCATGC AAACAAACCC CATACCCTAG CGTCTGCGAC 
    CACCACATGT CTAATTCACC TCTCAAAACT TTAGACGACC AAACGGATGG 
    GTTCACTTTC CACGACCTTG TGGTCAGCTC CACCATGGAC CAGGCCGTGC 
    AACTACACCG CCTTGTCTCT TCCTTGAAAC AGCATCATTC TCTCCACAAA 
    CACGCAACAT CAGCTTTGTT TGACTGCTTG GAGCTCTACG AAGACACTAT 
    AGACCAACTC AACCACTCTC GGAGATCGTA CGGTCAATAT TCTTCGCCAC 
    ATGATAGACA AACCTCGTTA AGCGCGGCCA TAGCTAATCA AGACACTTGC 
    AGAAACGGAT TTAGAGATTT TAAGTTAACC TCTTCGTATT CAAAGTATTT 
    CCCGGTACAA TTTCACAGGA ATCTCACTAA GTCTATTAGC AACTCTTTGG 
    CAGTTACTAA GGCTGCTGCT GAGGCTGAGG CGGTTGCCGA GAAATATCCA 
    TCGACGGGGT TCACTAAATT CAGCAAACAA AGAAGTAGTG CCGGAGGTGG 
    TAGCCACCGG AGATTATTGT TGTTTTCCGA CGAGAAATTT CCATCGTGGT 
    TCCCTCTTTC CGACCGTAAA CTACTGGAAG ATTCCAAAAC TACGGCAAAA 
    GCCGATCTTG TGGTGGCTAA GGACGGTTCG GGTCACTACA CAAGCATTCA 
    ACAAGCGGTA AACGCAGCTG CCAAACTTCC TCGGAGAAAC CAGAGACTTG 
    TGATATACGT TAAAGCCGGC GTTTACAGAG AAAACGTGGT AATCAAGAAA 
    TCGATCAAGA ACGTGATGGT TATCGGAGAT GGCATCGATT CTACCATCGT 
    CACCGGTAAT AGGAACGTTC AAGATGGCAC GACGACGTTT AGGTCCGCAA 
    CTTTTGCTGT TTCCGGCAAC GGTTTTATCG CACAAGGCAT AACATTCGAG 
    AACACGGCAG GACCGGAGAA ACATCAGGCG GTGGCTCTCC GATCAAGTTC 
    AGACTTCTCC GTCTTCTACG CCTGCTCTTT CAAAGGCTAT CAAGACACTC 
    TCTACCTTCA TTCTAGTCGT CAGTTCTTGA GAAACTGCAA TATTTACGGA 
    ACCGTCGATT TCATCTTCGG AGACGCAACC GCCATCCTCC AAAACTGTAA 
    CATCTACGCT CGTAAGCCGA TGAGCGGCCA GAAAAACACG ATCACCGCTC 
    AATCACGCAA AGAACCCGAC GAGACTACTG GCTTCGTCAT CCAGAGCTCG 
    ACGGTGGCTA CTGCGTCGGA AACTTATTTA GGACGGCCGT GGAGATCGCA 
    TTCGAGGACG GTTTTCATGA AATGTAATCT TGGAGCGTTG GTGAGTCCGG 
    CGGGATGGTT GCCTTGGAGT GGTAGTTTTG CTCTTAGCAC TCTTTATTAC 
    GGTGAGTATG GTAATACCGG CGCCGGAGCA AGTGTCTCCG GTAGAGTTAA 
    GTGGCCAGGT TATCATGTTA TAAAGACGGT GACAGAGGCG GAAAAATTCA 
    CGGTGGAGAA TTTCTTGGAC GGAAACTATT GGATTACGGC TACGGGAGTA 
    CCGGTCAACG ATGGACTTTG ATTTTTTTCT TAAAAGAATT AATTTTGTTA 
    GTGTGGTCTT TGTTGATTTT ATGTTTTTTT TGTTTGTTGG CGTATAATTG 
    TTATATATAG CTTTATTTCC CAAATCCCAT GTAACAGATG GATTGTCTTG 
    AATCTATATA GTATCTATAA TACCAAAAAA AAAA

    Gene models with high sequence identity

    1. AT1G23200.1 [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Pectinesterase inhibitor 0.00000000028
    HMMPfam Pectinesterase, catalytic 6.7e-133
    HMMPfam Pectinesterase inhibitor 2e-29
    Gene3D Pectinesterase inhibitor 0.00000037
    Gene3D Pectin lyase fold 8.8e-122
    HMMSmart Pectinesterase inhibitor 7.5e-33
    superfamily Pectin lyase fold/virulence factor 1.3e-115
    superfamily Pectinesterase inhibitor 5.8e-16
    PatternScan Pectinesterase, active site 0

    See the detailed result >

    AT1G23200.1

    Model type
    Protein coding
    Short Description
    Plant invertase/pectin methylesterase inhibitor superfamily
    Computational Description
    Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 3098 Blast hits to 3048 proteins in 474 species: Archae - 14; Bacteria - 863; Metazoa - 1; Fungi - 203; Plants - 1990; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR