F30405

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30405

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30405

Determination of introduced cDNA(s)

  • RAFL05-08-P17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-08-P17 - Resource: pda01087

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-08-P17 - full reading
    ATCACACAGC TCTTGAAAAC CATCTTAAAG CAACTCAAAG CTCAAATCGA 
    AATTTCTAGT TTCTCTTTAT CATTCACGCT AAGTGTTCAA TCGAATCAAG
    ATTAAGTATG GCAGAAGAGT ACAAGAACAC CGTTCCAGAG CAGGAGACCC
    CTAAGGTTGC AACAGAGGAA TCATCGGCGC CAGAGATTAA GGAGCGGGGA
    ATGTTCGATT TCTTGAAGAA AAAGGAGGAA GTTAAACCTC AAGAAACGAC
    GACTCTCGCG TCTGAGTTTG AGCACAAGAC TCAGATCTCT GAACCAGAGT
    CGTTTGTGGC CAAGCACGAA GAAGAGGAAC ATAAGCCTAC TCTTCTCGAG
    CAGCTTCACC AGAAGCACGA GGAGGAAGAA GAAAACAAGC CAAGTCTCCT
    CGACAAACTC CACCGATCCA ACAGCTCTTC TTCCTCTTCG AGTGATGAAG
    AAGGTGAAGA CGATGAGAAG AAGAAGAAGG AGAAAAAGAA GAAGATTGTT
    GAAGGAGATC ATGTGAAAAC AGTGGAAGAA GAGAATCAAG GAGTAATGGA
    CAGGATTAAG GAGAAGTTTC CACTCGGAGA GAAACCAGGG GGTGATGATG
    TACCAGTCGT CACCACCATG CCAGCACCAC ATTCGGTAGA GGATCACAAA
    CCAGAGGAAG AAGAGAAGAA AGGGTTTATG GATAAGATCA AGGAGAAGCT
    TCCAGGCCAC AGCAAGAAAC CAGAGGATTC ACAAGTCGTC AACACCACAC
    CGCTGGTTGA AACAGCAACA CCGATTGCTG ACATCCCGGA GGAGAAGAAG
    GGATTTATGG ACAAGATCAA AGAGAAGCTT CCAGGTTATC ACGCCAAGAC
    CACTGGAGAG GAAGAGAAGA AAGAAAAAGT GTCTGGTTAA GAGAAAAATA
    TGATAAGAGT GAATAATAAT GATGTGGGAG TGGGACTTAT GTTGTTTTTT
    GTTTTTTGTT GATCATTGTC TCTTTTATTT TGTCTTTCTA GCTGTTCTCC
    AAGTTTGTGT TTAGAGTTAG ATCATTTGTG TCTAAAATCT ATAAAATTAT
    TTTATCTATG GGGTAAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT1G20450.1 [+] show detail - Dehydrin family protein
      E-value: 0; Score: 99.81

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Dehydrin 1.5e-13
    HMMPfam Dehydrin 3.6e-22
    Coil coiled-coil 0
    PatternScan Dehydrin 0
    PatternScan Dehydrin 0
    PatternScan Dehydrin 0

    See the detailed result >

    AT1G20450.1

    Model type
    Protein coding
    Short Description
    Dehydrin family protein
    Curator Summary
    Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.
    Computational Description
    EARLY RESPONSIVE TO DEHYDRATION 10 (ERD10); CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: cold-regulated 47 (TAIR:AT1G20440.1); Has 8140 Blast hits to 5021 proteins in 461 species: Archae - 16; Bacteria - 327; Metazoa - 2363; Fungi - 375; Plants - 2004; Viruses - 65; Other Eukaryotes - 2990 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR