F30405

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30405

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30405

Determination of introduced cDNA(s)

RAFL05-08-P17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-08-P17 - Resource: pda01087

full reading [+] show sequence

ATCACACAGC TCTTGAAAAC CATCTTAAAG CAACTCAAAG CTCAAATCGA 
AATTTCTAGT TTCTCTTTAT CATTCACGCT AAGTGTTCAA TCGAATCAAG 
ATTAAGTATG GCAGAAGAGT ACAAGAACAC CGTTCCAGAG CAGGAGACCC 
CTAAGGTTGC AACAGAGGAA TCATCGGCGC CAGAGATTAA GGAGCGGGGA 
ATGTTCGATT TCTTGAAGAA AAAGGAGGAA GTTAAACCTC AAGAAACGAC 
GACTCTCGCG TCTGAGTTTG AGCACAAGAC TCAGATCTCT GAACCAGAGT 
CGTTTGTGGC CAAGCACGAA GAAGAGGAAC ATAAGCCTAC TCTTCTCGAG 
CAGCTTCACC AGAAGCACGA GGAGGAAGAA GAAAACAAGC CAAGTCTCCT 
CGACAAACTC CACCGATCCA ACAGCTCTTC TTCCTCTTCG AGTGATGAAG 
AAGGTGAAGA CGATGAGAAG AAGAAGAAGG AGAAAAAGAA GAAGATTGTT 
GAAGGAGATC ATGTGAAAAC AGTGGAAGAA GAGAATCAAG GAGTAATGGA 
CAGGATTAAG GAGAAGTTTC CACTCGGAGA GAAACCAGGG GGTGATGATG 
TACCAGTCGT CACCACCATG CCAGCACCAC ATTCGGTAGA GGATCACAAA 
CCAGAGGAAG AAGAGAAGAA AGGGTTTATG GATAAGATCA AGGAGAAGCT 
TCCAGGCCAC AGCAAGAAAC CAGAGGATTC ACAAGTCGTC AACACCACAC 
CGCTGGTTGA AACAGCAACA CCGATTGCTG ACATCCCGGA GGAGAAGAAG 
GGATTTATGG ACAAGATCAA AGAGAAGCTT CCAGGTTATC ACGCCAAGAC 
CACTGGAGAG GAAGAGAAGA AAGAAAAAGT GTCTGGTTAA GAGAAAAATA 
TGATAAGAGT GAATAATAAT GATGTGGGAG TGGGACTTAT GTTGTTTTTT 
GTTTTTTGTT GATCATTGTC TCTTTTATTT TGTCTTTCTA GCTGTTCTCC 
AAGTTTGTGT TTAGAGTTAG ATCATTTGTG TCTAAAATCT ATAAAATTAT 
TTTATCTATG GGGTAAAAAA AAAAAAAAAA

Gene models with high sequence identity

AT1G20450.1 [+] show detail - Dehydrin family protein
E-value: 0; Score: 99.81

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Dehydrin	1.5e-13
HMMPfam	Dehydrin	3.6e-22
Coil	coiled-coil	0
PatternScan	Dehydrin	0
PatternScan	Dehydrin	0
PatternScan	Dehydrin	0

See the detailed result >

AT1G20450.1

Model type: Protein coding
Short Description: Dehydrin family protein
Curator Summary: Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.
Computational Description: EARLY RESPONSIVE TO DEHYDRATION 10 (ERD10); CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: cold-regulated 47 (TAIR:AT1G20440.1); Has 8140 Blast hits to 5021 proteins in 461 species: Archae - 16; Bacteria - 327; Metazoa - 2363; Fungi - 375; Plants - 2004; Viruses - 65; Other Eukaryotes - 2990 (source: NCBI BLink).
Link: InterPro Scan - TAIR