F30406

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30406

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30406

Determination of introduced cDNA(s)

  • RAFL05-07-A02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-07-A02 - Resource: pda02462

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-07-A02 - full reading 
    AGTCTCCGTC TCTTCGCTTC TAGGGTTTCA TCAACCAAAT TCGCTTTCGC 
    CGCCTTTCCA CAAGCAATCA TGGTGCTCCA AAACGACATC GATCTCCTTC 
    ATCCGCCACC TGAGCTTGAG AAGAGAAAGC ATAAGCTCAA GCGTCTCGTG 
    CAATCTCCCA ACTCCTTCTT CATGGATGTT AAGTGTCAGG GATGCTTCAA 
    CATAACCACT GTGTTCAGCC ATTCTCAAAC TGTTGTGGTA TGTGGAAACT 
    GTCAGACAGT TCTGTGCCAG CCCACCGGTG GTAAAGCGAG GCTACAAGAG 
    GGATGCTCTT TCAGGAAGAA GTGAGATTGA GATCTCACGA ATCATTCATC 
    CGTTCGCAGA TGTTTTGCTT TAGTAGTTTT GATATCTATG ACGTTTTTCT 
    GCTTATGAGA AGATTTTGAA TGCATGATAA AACTACTAGC TGAGTAATTG 
    TTCAGAACTT GGTCTTGTTG AAACAGAATA TGCTTTCATT TTAAGTTTAA 
    ATCTTTCTCG GATTGCATCA AAAAAAAAAA AAAAAAAAAA AAAAAAAAGA 
    AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT5G47930.1 [+] show detail - Zinc-binding ribosomal protein family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribosomal protein, zinc-binding domain 3.3e-21
    HMMPfam Ribosomal protein S27e 1.2e-26
    PatternScan Ribosomal protein S27e 0
    BlastProDom Ribosomal protein S27e 3e-16
    HMMPanther Ribosomal protein S27e 1e-54

    See the detailed result >

    AT5G47930.1

    Model type
    Protein coding
    Short Description
    Zinc-binding ribosomal protein family protein
    Computational Description
    Zinc-binding ribosomal protein family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein S27e (InterPro:IPR000592); BEST Arabidopsis thaliana protein match is: ribosomal protein S27 (TAIR:AT3G61110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR