F30524

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30524

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F30524

Determination of introduced cDNA(s)

  • RAFL05-18-H06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-H06 - Resource: pdz87518

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-18-H06 - 5 prime EST 
    GAAGAAACCA AAAGAGTAAA ACAAACACAG AGAAGCTTCT TCTTAAACGA 
    TGCCGTACTA TACCAGAGAT GACAACGACG TCGACGATTT CGATGAGTTT 
    GATCCAACGC CGTACAGTGG TGGTTACGAC ATCACGGTGA TCTACGGCCG 
    TCCGATTCCA CCTTCCGATG AGACTTGTTA TCCTNTCTCA TCTGGTGTCG 
    ATGATGATTT CGAATACGAG AGACCTGAAT TTACTCAGAT CCATGAGCCT 
    TCTGCTTACG GTGATGAAGC TCTTAACACA GAGTACAGTA GCTATTCTCG 
    ACCCAAGCCA CGACCCGCAT TTCGACCCGA TTCAGGTGGT GGTGGTCATG 
    TTCAAGGTGA AAGACCAAAT CCTGGTTATG GATCTGAATC CGGTTATGGG 
    AGGAAACCGG AATCTGAGTA CGGATCTGGC TATGGTGGAC AAACGGAGGT 
    GGAGTATGGT CGGAGACCTG AGCNGAGTNA TGGATCTGGT TATGGTGGAA 
    GGACGGA

    Gene models with high sequence identity

    1. AT5G39570.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cy...
      E-value: 0; Score: 99.41

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-18-H06 - 3 prime EST 
    AACACAAAAC GATAGATAGA AAACGAAACA GAGTAGCAAC AGTTACATGG 
    TGACCCAATA CCACTTAAAG GTCTTATTAT GAACCAGTAC GAAGACTCTG 
    TAGTAATAAT ACAGAGATTC AAACAAACAC AACACCAACG TCGGAAGATA 
    TTATGTAGAA AGGTATGTGA CTTAGCTCTT TATTTAGTAG ATTTTTGAGG 
    CTAAGCAAAC ACACATTCTC ATTACACTCT CTAGCACAGA GAGGGTTTAG 
    TTTACTCATC GTCTTCGTCA CGACGCTTCT GGTGGTGATG CTTGTGACGG 
    TGCTTCTTCT TCTCCTCATC CTCATCAGAG TCATTGCCAC CATATTTCTT 
    GCGGCCATAG CTCCCTTCCT CATCATCACC AGAACCAGAA CGGTTCCTAC 
    GCTGCTCATC ATCATCATCG TCATTGCCAC GGCCATAGCT AGGCTGCTTC 
    CTGTAACTCC CCTCTTCCTG TTCCTCAGAC CTCCCATAAC TAGGCTTCCT 
    GTAACTTCCC TCCTCCTGTT CCTCAGATCT TCCATAGCTA GGCTTAATGT 
    AACTCTCCAC CTGATCATCA GACCTCCCAT AACTAGGTTT CCTGTAACTT 
    CCTTCCTCTT GTTCCTCAAA TC

    Gene models with high sequence identity

    1. AT5G39570.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cy...
      E-value: 0; Score: 100.00

    AT5G39570.1

    Model type
    Protein coding
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR