F01049

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01049

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01049

Determination of introduced cDNA(s)

  • RAFL09-11-K06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-11-K06 - Resource: pda01621

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-11-K06 - full reading 
    GATCTCAGAT CTCTCCCTCC CTCTTTCTCC GATCTCAGAT CCATTCAACA 
    ATCTACAAAG AAGATGGAAC CAGTCTCTTC ATGGGGTAAC ACCTCTCTCG 
    TCTCCGTAGA TCCAGAGATC CACGACCTAA TCGAGAAGGA GAAACGTCGG 
    CAATGTCGAG GAATCGAACT TATCGCTTCC GAGAATTTCA CTTCCTTCGC 
    CGTCATCGAA GCTCTCGGAA GTGCCTTAAC CAACAAATAC TCCGAAGGTA 
    TTCCTGGTAA TCGTTATTAC GGAGGTAACG AATTCATCGA TGAGATCGAG 
    AATCTTTGCC GTTCAAGAGC TCTCGAAGCT TTCCATTGTG ATCCAGCAGC 
    GTGGGGCGTT AATGTTCAGC CGTATTCTGG ATCTCCGGCA AATTTCGCTG 
    CTTACACGGC TTTGCTTCAG CCTCACGATC GTATCATGGG GCTTGATTTG 
    CCTTCAGGTG GTCATTTGAC TCATGGTTAC TATACATCTG GTGGTAAGAA 
    GATCTCTGCG ACTTCGATCT ACTTTGAGAG TCTTCCGTAT AAGGTGAATT 
    TCACCACTGG TTACATTGAT TACGATAAGC TTGAAGAGAA GGCGTTGGAT 
    TTCAGGCCTA AGTTGCTTAT CTGTGGTGGT AGTGCGTATC CTAGGGATTG 
    GGATTACGCT AGATTTAGAG CTATTGCTGA TAAGGTTGGA GCTCTTTTGC 
    TTTGTGACAT GGCTCACATC AGTGGTCTCG TTGCTGCTCA GGAAGCTGCA 
    AACCCATTTG AGTACTGTGA CGTTGTGACA ACCACAACCC ACAAGAGTTT 
    GAGGGGTCCA AGGGCTGGTA TGATTTTCTA CAGGAAGGGT CCAAAACCAC 
    CAAAGAAGGG TCAACCCGAG GGTGCAGTCT ATGATTTTGA GGACAAAATC 
    AACTTTGCTG TATTCCCTGC GCTTCAAGGT GGTCCTCACA ATCACCAGAT 
    TGGTGCTCTA GCTGTTGCGT TGAAGCAGGC TAATACTCCT GGGTTCAAGG 
    TCTACGCAAA ACAAGTGAAA GCCAATGCTG TTGCCCTTGG AAACTACCTA 
    ATGAGCAAGG GTTACCAGAT TGTGACCAAT GGAACTGAGA ACCACCTTGT 
    TCTCTGGGAT CTTCGCCCTC TTGGATTGAC CGGAAACAAG GTTGAGAAGC 
    TCTGCGATCT GTGCAGCATT ACATTGAACA AGAACGCAGT ATTTGGAGAC 
    AGTAGTGCTC TTGCTCCTGG AGGTGTAAGA ATCGGTGCAC CCGCGATGAC 
    ATCGAGAGGA TTGGTGGAGA AGGACTTTGA GCAGATAGGA GAATTCCTGA 
    GCCGTGCAGT GACACTGACG TTGGACATCC AAAAGACATA CGGTAAGTTG 
    TTGAAGGACT TCAACAAGGG TTTGGTGAAC AACAAAGATC TCGATCAGCT 
    CAAGGCTGAT GTCGAGAAGT TCTCGGCGTC TTATGAGATG CCTGGATTCC 
    TCATGTCTGA GATGAAGTAC AAGGATTAGA GATCTTTCTC TATATGCAAG 
    AGTAATCTTC TATTATTATC TACCATATAT ATAAAATATG CTTTTGTAGG 
    ATCGCCTTAA AGGCGAAGAG ATGAAGATGC AAACAGTAAA AAAAAAGGGT 
    TTTCTTTTCA GCTATTTCTT CTTGAATGTT TTTTTTCTTT TTCTTTTGGT 
    TTCTTATTGA AATTGTTGTA TTTTTGTTGG CTTTTTTCTA ATAATATCAG 
    CGAGTTTTTC CT

    Gene models with high sequence identity

    1. AT4G13930.1 [+] show detail - serine hydroxymethyltransferase 4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    superfamily Pyridoxal phosphate-dependent transferase, major domain 3.4e-175
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 2.1e-102
    HMMPIR Serine hydroxymethyltransferase 1.5e-237
    HMMPfam Serine hydroxymethyltransferase 3.2e-187
    PatternScan Serine hydroxymethyltransferase, pyridoxal phosphate binding site 0
    HMMPanther Serine hydroxymethyltransferase 0

    See the detailed result >

    AT4G13930.1

    Model type
    Protein coding
    Short Description
    serine hydroxymethyltransferase 4
    Curator Summary
    Encodes a serine hydroxymethyltransferase maximally expressed in root
    Computational Description
    serine hydroxymethyltransferase 4 (SHM4); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: response to cadmium ion, glycine metabolic process, L-serine metabolic process; LOCATED IN: cytosol, plasma membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT4G13890.1); Has 11689 Blast hits to 11661 proteins in 2862 species: Archae - 259; Bacteria - 6437; Metazoa - 341; Fungi - 289; Plants - 375; Viruses - 6; Other Eukaryotes - 3982 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • RAFL08-14-N15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-14-N15 - Resource: pda09594

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-14-N15 - full reading 
    ACTCTCTGAT CTCAGATCTC TCCCTCCCTC TTTCTCCGAT CTCAGATCCA 
    TTCAACAATC TACAAAGAAG ATGGAACCAG TCTCTTCATG GGGTAACACC 
    TCTCTCGTCT CCGTAGATCC AGAGATCCAC GACCTAATCG AGAAGGAGAA 
    ACGTCGGCAA TGTCGAGGAA TCGAACTTAT CGCTTCCGAG AATTTCACTT 
    CCTTCGCCGT CATCGAAGCT CTCGGAAGTG CCTTAACCAA CAAATACTCC 
    GAAGGTATTC CTGGTAATCG TTATTACGGA GGTAACGAAT TCATCGATGA 
    GATCGAGAAT CTTTGCCGTT CAAGAGCTCT CGAAGCTTTC CATTGTGATC 
    CAGCAGCGTG GGGCGTTAAT GTTCAGCCGT ATTCTGGATC TCCGGCAAAT 
    TTCGCTGCTT ACACGGCTTT GCTTCAGCCT CACGATCGTA TCATGGGGCT 
    TGATTTGCCT TCAGGTGGTC ATTTGACTCA TGGTTACTAT ACATCTGGTG 
    GTAAGAAGAT CTCTGCGACT TCGATCTACT TTGAGAGTCT TCCGTATAAG 
    GTGAATTTCA CCACTGGTTA CATTGATTAC GATAAGCTTG AAGAGAAGGC 
    GTTGGATTTC AGGCCTAAGT TGCTTATCTG TGGTGGTAGT GCGTATCCTA 
    GGGATTGGGA TTACGCTAGA TTTAGAGCTA TTGCTGATAA GGTTGGAGCT 
    CTTTTGCTTT GTGACATGGC TCACATCAGT GGTCTCGTTG CTGCTCAGGA 
    AGCTGCAAAC CCATTTGAGT ACTGTGACGT TGTGACAACC ACAACCCACA 
    AGAGTTTGAG GGGTCCAAGG GCTGGTATGA TTTTCTACAG GAAGGGTCCA 
    AAACCACCAA AGAAGGGTCA ACCCGAGGGT GCAGTCTATG ATTTTGAGGA 
    CAAAATCAAC TTTGCTGTAT TCCCTGCGCT TCAAGGTGGT CCTCACAATC 
    ACCAGATTGG TGCTCTAGCT GTTGCGTTGA AGCAGGCTAA TACTCCTGGG 
    TTCAAGGTCT ACGCAAAACA AGTGAAAGCC AATGCTGTTG CCCTTGGAAA 
    CTACCTAATG AGCAAGGGTT ACCAGATTGT GACCAATGGA ACTGAGAACC 
    ACCTTGTTCT CTGGGATCTT CGCCCTCTTG GATTGACCGG AAACAAGGTT 
    GAGAAGCTCT GCGATCTGTG CAGCATTACA TTGAACAAGA ACGCAGTATT 
    TGGAGACAGT AGTGCTCTTG CTCCTGGAGG TGTAAGAATC GGTGCACCCG 
    CGATGACATC GAGAGGATTG GTGGAGAAGG ACTTTGAGCA GATAGGAGAA 
    TTCCTGAGCC GTGCAGTGAC ACTGACGTTG GACATCCAAA AGACATACGG 
    TAAGTTGTTG AAGGACTTCA ACAAGGGTTT GGTGAACAAC AAAGATCTCG 
    ATCAGCTCAA GGCTGATGTC GAGAAGTTCT CGGCGTCTTA TGAGATGCCT 
    GGATTCCTCA TGTCTGAGAT GAAGTACAAG GATTAGAGAT CTTTCTCTAT 
    ATGCAAGAGT AATCTTCTAT TATTATCTAC CATATATATA AAATATGCTT 
    TTGTAGGATC GCCTTAAAGG CGAAGAGATG AAGATGCAAA CAGTAAAAAA 
    AAAGGGTTTT CTTTTCAGCT ATTTCTTCTT GAATGTTTTT TTTCTTTTTC 
    TTTTGGTTTC TTATTGAAAT TGTTGTATTT TTGTTGGCTT TTTTCTAATA 
    ATATCAGCGA GTTTTTCTTT CCACTGTTTC AATTAAATAC GGTGTGTTTG 
    TATGGGTTTT AGTTTCATAG ATTGAATTAT TTGTACTCAA CTAAGGAATT 
    CTTGTAAATG CAAAAAAAAA AGAAAGTTTT ACGAAAAGTA AAAAAAAAAA 
    AAAAAGAGCT CTTGGATCCT TCTCTTTGAA AGGTGGATTC TTTTTGGCCG 
    GAGAAAGCCA ATTCTGAGCT CGCCAATGGC TAACAGAGCA TTGAACCGGC 
    TTCTACGGAA TTTCTTTGTA GAAAGTTCAC CATTCAGGAA GAGAAGTGGA 
    TTGTATCAAG GAGTTGTTTA CAATGTAATC AAACGGTTTC AGTCTCATTT 
    ATCAGAGTCC GGGAAGGTAG AAAAGGAGTT AGAAGAGCAG GAGGCAGAGA 
    AGAGAAGGCC TAGTAGTGTC ACTTCTTCGA GGTCCGGATT AGAGAAAAGA 
    AGACAATTTG AATCAGGAAT CGACAATGAT AGCTCTAGTG ATGAAGATAC 
    AGGTGATGGA AAGTGGAAAC TAGACCTAGC TTGGCTCACT AAAGCACTTG 
    AGCCAGCTAT GCAATTACGT AGATGGGCTC TTCCAACAGG AGAGAAGTCA 
    CTGCCTGGTA GTCGATCTCT GTCTGAGATA ATTGCTAGTA TTCAGAGGAG 
    TAGGCTTGGG ATTGAAGGTT GGACTTTTGG TGATCTTACT ATTGGTCTCT 
    ATCTTATATA CCTTAGACAA GCATCCTTGT CTCCATTTGA GGACGTCAAG 
    GGCGTAGAAG TTGTTTCAGA GTCTACAGTT TATGATCTGA TATATAATGC 
    GGAGTTAGCA AAAGGTTGTT ACAGGGATAG TGTGAGTGGT CTTGCAAAGA 
    ACACCATGCT TCGAGAGAAT AACATTCTTA AATTTGTGAA AGATTCAAGT 
    GTTATGAGGC CTGGATACTA CATAGGAGTT GATCATCGAA GGAAACTTGT 
    TGTCTTTGGA ATACGCGGGA CACATACAAT TTACGATCTT ATCACTGACA 
    TTGTCTCTTC AAGCGATGAA GAAGTCACTT TTGAAGGCTA CTCAACACAC 
    TTTGGAACTG CTGAAGCTGC ACGATGGTTC CTTAACCACG AATTGCAAAC 
    TATAAGAAGA TGCTTAGCGA AATACGAGGG ATACAAGCTA CGGCTTGTTG 
    GTCATTCTCT CGGCGGTGCT ATAGCCTCCT TAATGGCGAT AATGCTCAAG 
    AAAATGCCAA GGGAGGAATT GGGATTCGAT GCTGAAATTA TTTCAGCCGT 
    TGGGTATGCG ACACCTCCTT GTGTTTCCAA AGAGCTTGCA GAGAATTGCT 
    CTGAGTTTGT AACAACTATT GTAATGCAGG ACGACATTAT ACCTAGACTC 
    AGTGCAGCTT CTCTAGCGAG ATTGAGGAAT GAAATCCTTC AGACAGATTG 
    GACAAGTGTA ATTGAGAAGG AAGAATGGAA GAACGTTTTG GATTTGGTAA 
    CAAACGCAAA ACAAGTTGTC ACCTCTGTGC AAGACGTAGC TAGAAAAGTT 
    TCTGATTATG CAAACTTCGG AAACAAAAAA GAAGTTCCAG AAATCCCGTC 
    ATCCAAGAAC AACCAGTCTG GGATATTAAT CTCTGACTCT ACTACTAAAG 
    ATGTTGTGAA ATTGCCAGAA GAGTTATATG TACCGGGTGC AGTTTACTAT 
    CTGATGAGGA GCCTAAGAGG AACCCCGAAA AGCTCAGCAG GAAAACAAGT 
    AGAGTACTAT AGTCTATGGA AGAGAGATCC AGGACAACAT TTTCAGAGGA 
    TACTTCTCTC CGGTAATTTC ATTACAGACC ATAAATGTGA TAGCCATTAC 
    TACGCTCTGC GAGATGTGCT CAAAGGATTT CCCAGTTTCA TCAACGAAAG 
    CATCTTTAAG AAGTGAAATA CTGAAATGGA ATCTCATCTC TGGATAGAAC 
    GTAATGTTTT AGTTTGTGAG TTTGTCTGCA AACATTTTTT TAAGAATAAA 
    TGATCAGTTT ATCCCAGCAT GAAAAAATTA TGCTTCTTAG AAATTTTGAA 
    TGATTAATGA AAAGCTGGCT GTGATTGCTG ATTGGTTCCA AAAAAAAAAA 
    AAAAA

    Gene models with high sequence identity

    1. AT2G42450.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    PatternScan Serine hydroxymethyltransferase, pyridoxal phosphate binding site 0
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 2.1e-102
    Gene3D no description 2.8e-35
    HMMPfam Serine hydroxymethyltransferase 3.3e-187
    HMMPfam Lipase, class 3 1.5e-25
    HMMPIR Serine hydroxymethyltransferase 1.5e-237
    superfamily Pyridoxal phosphate-dependent transferase, major domain 3.4e-175
    superfamily alpha/beta-Hydrolases 7.6e-44
    HMMPanther Serine hydroxymethyltransferase 0
    HMMPanther CGI-141 RELATED 0
    HMMPanther CGI-141-RELATED/LIPASE CONTAINING PROTEIN 0

    See the detailed result >

    AT2G42450.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (TAIR:AT3G14075.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR