F06112

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06112

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06112

Determination of introduced cDNA(s)

RAFL09-69-F08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-69-F08 - Resource: pda06645

full reading [+] show sequence

GCGAAATCTC CACCAGAGTT ATGGGAATCA CCGGAAGTCT AACGCCAGAT 
CAGCTCGATT TTTTCCACTC TCAAGGGTAT TTGGTAATCG AATCGTTCGC 
GAGTGAGGAT GAGATAAGAG GCTTAAGGAA GAGGATGGAT GAGTTGCTTA 
ATCAGTTTGA TTGTTCCGTC TCCTCTATCT TCTCCACCAA AAATCAGAAG 
CACACCACAG ATAATTACTT CTTTGAGAGC GCTGAGAAAA TCTCCTTCTT 
CTTTGAAGAA AAAGCTTTTG GTGATGATGG GAAATTGAAG CAACCCAAAC 
AACTCTCTAT AAACAAAGTT GGGCATGCAC TGCATGAGCT TGACCCATTG 
TATAAGGATT TCACATATTC GTCAAAGTTT TCAAGTTTGG CATCATCCTT 
AGGTTACAGG AGACCAGTTG TCATGCAGTC TATGTATATT TTCAAGCAAC 
CTGGAATTGG AGGCGAAGTT GTGCCGCACC AAGATAATTC TTTTGTGTAC 
ACGGATCCAC AGAGTTGTAC TGGTCTCTGG ATTGCTCTTG AAGATTCTAC 
ATTAGTTAAT GGTTGTCTTT GGGCAATTCC TGGATCTCAT AAGAATGGTT 
TAGTTAGAAG GTTTATCCGT GGTGACAACG GTATAACCTT TGATCAGCCA 
TCCCCATCTT ACGAGCAGAA AGATTTTGTG TCTATTGAAA TGAAAGCAGG 
CTCATTGATT GCCATTCATG GTGATCTAAT CCATCAAAGT TTCGAGAATC 
TATCCTCGAA GTCAAGACAT GCCTATAGCT TACATGTAGT AGAATCTGAT 
GGATGTAAAT GGGCAAAAGA CAACTGGATA CAAAGAGCAA AAATGCCGGA 
GCCTCTCTAT GTTCTTCCTT GATTCAAGCC AGTCGTGGAA AAACACTGTG 
AGTTACTGTT TATCAAATTT CTTTTAAGAT CACTATCTTT GTGAGAACTA 
TGAACAGTAA TAAGAACATG GCTAAAAGGG CCTTCTTGTG TCGTTTACTT 
GTTGAAATAC AATTTGTTTC TTCTTGGCC

Gene models with high sequence identity

AT2G01490.1 [+] show detail - phytanoyl-CoA dioxygenase (PhyH) family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1	8.8e-133
HMMPfam	Phytanoyl-CoA dioxygenase	9.2e-65

See the detailed result >

AT2G01490.1

Model type: Protein coding
Short Description: phytanoyl-CoA dioxygenase (PhyH) family protein
Computational Description: phytanoyl-CoA dioxygenase (PhyH) family protein; FUNCTIONS IN: phytanoyl-CoA dioxygenase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phytanoyl-CoA dioxygenase (InterPro:IPR008775); Has 2926 Blast hits to 2921 proteins in 334 species: Archae - 4; Bacteria - 485; Metazoa - 347; Fungi - 101; Plants - 64; Viruses - 0; Other Eukaryotes - 1925 (source: NCBI BLink).
Link: InterPro Scan - TAIR

RAFL05-08-P24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-08-P24 - Resource: pda01074

full reading [+] show sequence

ACACATCCAA CAACAAAACA CAAGCGTAGA AAACAAAACT CAACTAATTG 
TGTTATCACC CAAAAGAGAA GAGCAAACAC AATGGCTTTC GCTTTGAGGT 
TCTTCACATG CTTTGTTTTG ACAGTGTTCA TCGTTGCATC AGTGGATGCA 
GCAATAACAT GTGGCACAGT GGCAAGTAGC TTGAGTCCAT GTCTAGGCTA 
CCTATCAAAG GGTGGGGTGG TGCCACCTCC GTGCTGTGCA GGAGTCAAAA 
AGTTGAACGG TATGGCTCAA ACCACACCCG ACCGCCAACA AGCATGCAGA 
TGCTTACAGT CCGCTGCAAA AGGGGTTAAT CCAAGTCTAG CCTCTGGCCT 
TCCTGGAAAG TGCGGTGTTA GCATCCCCTA TCCCATCTCC ACGAGCACCA 
ACTGCGCCAC CATCAAGTGA AGTGGGGAAT AACGACATCA TTTGCCTGAA 
GAGTATGGTT TCGTATACGT AAAATAAGAC GGCTATCTAA GCTGATATTT 
ACCTTGTCTT TGTTTGTCTT GATGGCTTTG TAATCTTTTG CTTTGTTATG 
TTGTATACTT GTGTCTTAAC ATGTTTAAGA TATGATAATA TATAGTATCG 
GTACCTTATT AAAAAAAAAA AAAAAA

Gene models with high sequence identity

AT5G59310.1 [+] show detail - lipid transfer protein 4
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Bifunctional inhibitor/plant lipid transfer protein/seed storage	7.3e-30
HMMSmart	Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor	1.5e-15
Gene3D	Plant lipid transfer protein/hydrophobic protein, helical domain	4.8e-30
FPrintScan	Plant lipid transfer protein/Par allergen	4.1e-22
FPrintScan	Plant lipid transfer protein/Par allergen	4.1e-22
FPrintScan	Plant lipid transfer protein/Par allergen	4.1e-22
FPrintScan	Plant lipid transfer protein/Par allergen	4.1e-22
PatternScan	Plant lipid transfer protein/Par allergen	0
HMMPfam	Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor	3.5e-08

See the detailed result >

AT5G59310.1

Model type: Protein coding
Short Description: lipid transfer protein 4
Curator Summary: Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.
Computational Description: lipid transfer protein 4 (LTP4); FUNCTIONS IN: lipid binding; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus, lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein 3 (TAIR:AT5G59320.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR