F08628

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	increased width (PATO:0000600) (Rosette leaf::Shape::wide)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08628

Determination of introduced cDNA(s)

RAFL02-10-L11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-10-L11 - Resource: pda00168

full reading [+] show sequence

ACCAAACAGC AAAACAAGAA GAACAACAAC ACTAAGCAAA AAAGAAAAGC 
TCAAGCCGAG AGAGACAATG GCATCAACAT TCACGAGCTC AAGCAGTGTT 
CTTACCCCAA CAACATTCCT TGGCCAGACT AAAGCCTCAA GCTTTAACCC 
CCTTCGTGAT GTTGTCTCTC TCGGATCTCC CAAGTACACT ATGGGAAATG 
ATCTTTGGTA TGGACCTGAC AGAGTGAAGT ACTTAGGACC CTTTTCCGTT 
CAAACTCCGT CTTACCTCAC CGGAGAATTC CCTGGCGATT ATGGTTGGGA 
CACCGCCGGT TTATCCGCAG ACCCTGAAGC CTTTGCCAAA AACAGAGCTC 
TTGAGGTGAT CCATGGGAGA TGGGCAATGT TGGGAGCTTT TGGTTGCATA 
ACCCCTGAAG TTCTTCAAAA GTGGGTCCGT GTGGACTTCA AAGAACCAGT 
CTGGTTCAAA GCCGGTTCAC AAATCTTCTC CGAAGGCGGT TTGGACTACT 
TAGGCAACCC AAACCTAGTC CATGCTCAGA GCATTTTAGC CGTCCTTGGC 
TTCCAAGTCA TCCTCATGGG TTTGGTTGAA GGTTTCCGCA TCAACGGTCT 
TGATGGTGTT GGCGAAGGCA ACGACTTGTA CCCCGGTGGG CAATACTTTG 
ACCCGTTGGG TCTCGCTGAT GATCCAGTTA CTTTTGCTGA GCTTAAGGTG 
AAAGAGATCA AGAACGGAAG ATTGGCTATG TTCTCTATGT TTGGCTTCTT 
TGTTCAAGCC ATTGTTACTG GAAAAGGTCC TTTGGAGAAT CTCCTTGACC 
ATCTTGACAA CCCTGTTGCT AACAATGCGT GGGCTTTCGC AACTAAGTTT 
GCACCTGGAG CTTAAATTTT CAAGTCTTGA TGTGATTCTT GTAATGATAT 
GAACATAACC TTTCTTGTTC CTCTCAAATT ACAAATCTTC TATTTGCTAT 
GC

Gene models with high sequence identity

AT5G54270.1 [+] show detail - light-harvesting chlorophyll B-binding protein 3
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	Chlorophyll A-B binding protein	2.4e-159
superfamily	Chlorophyll a-b binding protein	8.4e-77
HMMPfam	Chloroa_b-bind	3.9e-49

See the detailed result >

AT5G54270.1

Model type: Protein coding
Short Description: light-harvesting chlorophyll B-binding protein 3
Curator Summary: Lhcb3 protein is a component of the main light harvesting chlorophyll a/b-protein complex of Photosystem II (LHC II).
Computational Description: light-harvesting chlorophyll B-binding protein 3 (LHCB3); FUNCTIONS IN: structural molecule activity; INVOLVED IN: photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.1 (TAIR:AT2G05100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

RAFL09-15-H08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-15-H08 - Resource: pda01950

full reading [+] show sequence

GTGATCTTCC TATTTCTGAC GCTAATTCGA ATCCTTCACT CTTCAAATTG 
ATTCTTTCAC GGATCAAACA AATTATCTGA GAGTACCGAT TGGTAAGATC 
TGAGCTTTAC GCTATGAATT TCTTCAAATC CGTCTTCACG GAAGACCTAG 
ATCCTCCAGA AACCGAATCC GAATCCGATT CACCGAAACA CAGCGAAGAG 
CATGAACATC CAGAGCAAGA ACATCCAGAG CAATCTGAAT CTAACGACGA 
CGGTGGATGG AGCTTCGGTG GTCTGATGAA AACTCTAGCC ACCAGATCCG 
AATCCGTGAT TGAAACCTAC CGACGAGATC TCGAAGAATT TGGCACAGGT 
TTGAAGAAAG AGATCGAGGT GGCTCAGGGA TCGCTTGGTA CGGTGGGACA 
TGCGATTGAT GAGCTTGGGA ACACGGTGCT AAAAGGTACG GCTGAGATTA 
TTGCTCAAGG TAAGGAAGCG ATTTTAGCCG CTGGTAATGA ATCTGATTCT 
TCTGATAACA ATAGTAGTCA GAGTTTTGGT CGTCGTGATA GCTTCAGTTC 
GAAACCATAT AGTCGTTTCG ATGCTCAGAT TCGTGCTGTT CAAGGAGATC 
TCAACACTTA CTGTGAAGAG CCTGAGGATT CAGATGATTA CAAAAAGTGG 
GAATCTGCGT TTTCTCTGGA TGGAAAAGCT GAGGAGATGG AGAAATTGTT 
GGAGGAAAAT GGTGATATGA AAGGAGTGTA TAAAAGGGTC GTTCCGAGTA 
TGGTTGATCA CGAGACCTTC TGGTTTAGGT ATTTCTATAG GGTTAACAAG 
CTCAAGCAAG CTGAGGATTT AAGGGCTAAT CTTGTGAAAC GAGCCATCTC 
TCTGGATGAT GAAGAAGAAT TGAGCTGGGA TATTGATGAT GAAGAGGAGA 
GCAGCGAGAA AGTTGTTGAA GCTACCAAAG ATGTTTCAAG GTTGAAACTT 
GAAGGGAATG ATGGTATGGG TGGTGGAGAT GTGAGTGAAA CTGTGAAAGA 
TGAAGTGGAA AGTACATATT CAGTGGCTAA AGTGAGCACG CAAGATGAAG 
TGACAAGTGC AGATTCAGTG ACTGAAGTGA GCAATGTTGG TTTGAAGACA 
GATAAAGATT CTGAGGAAAA GAAGGAGACT GATAGTGAGG AAGTTCCAGA 
AGAAAAATCA TTTGTTGATG CTGCTCCTCC TGCGTCTGAT GAGGCTCCAA 
TCCAAGATTC TGTCAAACCA ACATCTGATG AGGCTCCAAT CCAAGATTCT 
GTCAAACCAA AATCTGATGA GGCTGCTCCA TCCCAAGACT CAGCTAAACC 
AGATGTGGCT GCTTCTTCAT CAACTCAACA ACCATCTGAA GAGGATTTGG 
GATGGGACGA GATCGAGGAT ATGAGTAGCA TAGATGGTAA GGAAACGAGT 
CGGTCTGGTG GTAGTCCAAA CAGAGCTGAG CTGCGTAAAC GTCTGAGTGC 
TGCAGAGGAA GATGAAGATT TAAGTTGGGA CATTGATGAA GATGACGAAG 
AAGAATCATC ATCATCCAAA GCTTAATGTT AGTTTTAAAG TGGTGTGCTT 
TCTTACTTTT GCCAATCCTT TTACTTGTTT TTACAAGTTT CTGGCGCTTT 
GCCCCCATTC TTCAGTTGTT TTTCTCTTCA ACGTTTCTAT TTTACATTGA 
TTTGAAAATA TGTTTTTAAA TTTTACTTAA AAAAAAAAAA AAAA

Gene models with high sequence identity

AT1G03350.1 [+] show detail - BSD domain-containing protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
ProfileScan	BSD	17.896
HMMPfam	BSD	5.6e-15
HMMSmart	BSD	9.3e-19
HMMPanther	SYNAPSE-ASSOCIATED PROTEIN	4.4e-66

See the detailed result >

AT1G03350.1

Model type: Protein coding
Short Description: BSD domain-containing protein
Computational Description: BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT4G13110.1); Has 10642 Blast hits to 5945 proteins in 665 species: Archae - 52; Bacteria - 3714; Metazoa - 2927; Fungi - 1314; Plants - 393; Viruses - 71; Other Eukaryotes - 2171 (source: NCBI BLink).
Link: InterPro Scan - TAIR