F11038

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11038

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11038

Determination of introduced cDNA(s)

RAFL04-20-P19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-20-P19 - Resource: pda02400

full reading [+] show sequence

ATCTTCTCCG TTAAACCCAT TTAAATAGTT TTCATTGTCC TTGTGAAAAA 
TGCAATTCTC TTCATCTTCT ATTACTTCTT TCACTTGGAC AGTTTTAATC 
ACAGTGGGAT GTCTTATGCT TTGTGCGTCT TTCTCCGATG CTCAACTTAC 
CCCTACTTTT TACGACACTT CATGTCCTAC CGTCACCAAC ATTGTAAGAG 
ATACCATTGT CAACGAGCTA AGATCGGACC CTCGTATCGC CGGGAGCATC 
CTTCGTCTTC ACTTCCATGA CTGCTTTGTT AATGGTTGTG ATGCTTCGAT 
CTTGTTAGAC AACACGACAT CATTTCGAAC AGAGAAAGAT GCACTTGGAA 
ATGCAAATTC AGCCCGAGGA TTTCCAGTGA TTGATAGAAT GAAAGCTGCG 
GTGGAGAGGG CATGCCCAAG AACCGTTTCA TGCGCAGATA TGCTCACCAT 
TGCTGCTCAA CAATCTGTCA CTTTGGCAGG AGGTCCTTCT TGGAAGGTTC 
CTTTAGGGAG AAGAGACAGC TTACAAGCAT TTCTAGATCT TGCTAACGCA 
AATCTTCCAG CTCCATTCTT CACACTTCCA CAGCTTAAAG CCAACTTCAA 
AAATGTTGGC CTCGATCGTC CTTCTGATCT TGTTGCGCTC TCCGGGGCTC 
ACACATTTGG TAAAAATCAA TGTCGATTCA TTATGGACAG ATTATACAAC 
TTTAGCAACA CTGGATTACC TGACCCTACA CTCAACACTA CTTACCTCCA 
AACTCTTCGT GGTCAATGTC CTCGCAATGG TAATCAAAGC GTCTTAGTGG 
ATTTCGATCT GCGTACGCCT TTGGTTTTCG ACAACAAATA CTATGTGAAT 
CTTAAAGAGC AAAAAGGTCT TATCCAGAGC GACCAAGAGT TGTTCTCTAG 
CCCCAATGCC ACTGACACAA TCCCCTTGGT GAGAGCATAT GCTGATGGCA 
CACAAACATT CTTCAATGCA TTCGTGGAGG CAATGAATAG GATGGGAAAT 
ATTACACCAA CTACAGGAAC TCAAGGACAA ATCAGGTTGA ATTGTAGAGT 
GGTGAACTCC AACTCTCTAC TCCATGATGT GGTGGATATC GTTGACTTTG 
TAAGTTCTAT GTGAGAATAG TTGACTCAAT ATCTGGCGAC CAGACTATAT 
GTTAAGATAA ATAAGCGGGA TCTCAAGTTG TTACTTGAGC AGGAGCAGAT 
TGTATTGGTG TTTATAGTAT CCAAGTAGTT CTCTGTTTTT TTTTTATATT 
GGCCTTTGAT AGCGTTTTGT TAATCGGTCT AAGCTTCTAT GGTTTTGGAC 
TGTTTTATCC T

Gene models with high sequence identity

AT3G49110.1 [+] show detail - peroxidase CA
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Haem peroxidase, plant/fungal/bacterial	79.934
HMMPfam	Haem peroxidase, plant/fungal/bacterial	1.5e-70
PatternScan	Peroxidases heam-ligand binding site	0
PatternScan	Peroxidase, active site	0
superfamily	Haem peroxidase	1.2e-112
FPrintScan	Plant peroxidase	5.8e-68
FPrintScan	Plant peroxidase	5.8e-68
FPrintScan	Plant peroxidase	5.8e-68
FPrintScan	Plant peroxidase	5.8e-68
FPrintScan	Plant peroxidase	5.8e-68
FPrintScan	Plant peroxidase	5.8e-68
FPrintScan	Plant peroxidase	5.8e-68
FPrintScan	Plant peroxidase	5.8e-68
FPrintScan	Plant peroxidase	5.8e-68
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.6e-33
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.6e-33
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.6e-33
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.6e-33
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.6e-33
Gene3D	no description	9.8e-61

See the detailed result >

AT3G49110.1

Model type: Protein coding
Short Description: peroxidase CA
Curator Summary: Class III peroxidase Perx33. Expressed in roots. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response.
Computational Description: peroxidase CA (PRXCA); FUNCTIONS IN: peroxidase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to light stimulus, defense response to bacterium, defense response to fungus, unidimensional cell growth; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: peroxidase CB (TAIR:AT3G49120.1); Has 4322 Blast hits to 4294 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 31; Plants - 4239; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link: InterPro Scan - TAIR

RAFL09-16-M04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-16-M04 - Resource: pda01912

full reading [+] show sequence

ATCTCTACAC TTCTCATCTC TCAATCCCAT TCGCTTATTA TTTATCCATA 
TGGGAAAGGT TCTTGAGAAG GAGGCGTTTG GATTGGCTGC GAAAGACGAA 
TCGGGAATTC TTTCGCCTTT CAGTTTCTCT AGAAGGGCGA CGGGTGAAAA 
GGATGTGAGG TTCAAAGTCT TGTTCTGTGG AATTTGCCAC ACTGATCTGA 
GTATGGCCAA AAACGAATGG GGGTTAACTA CTTATCCTCT TGTCCCTGGG 
CATGAGATTG TGGGCGTGGT GACTGAAGTT GGAGCCAAAG TGAAAAAATT 
CAACGCTGGA GACAAAGTCG GAGTTGGCTA TATGGCCGGC TCGTGCAGGT 
CATGTGACAG CTGCAATGAT GGCGACGAGA ACTACTGTCC AAAGATGATC 
TTAACGTCCG GAGCCAAAAA CTTTGACGAT ACCATGACCC ATGGTGGATA 
CTCCGACCAC ATGGTGTGTG CTGAGGATTT CATCATCCGT ATTCCTGACA 
ATCTCCCATT AGACGGTGCC GCACCACTAC TCTGCGCCGG GGTCACGGTC 
TACTCCCCCA TGAAGTATCA CGGGCTCGAC AAGCCCGGTA TGCACATCGG 
TGTGGTGGGA CTAGGCGGTT TGGGCCATGT AGCAGTGAAA TTTGCTAAGG 
CTATGGGTAC TAAAGTTACG GTTATTAGTA CTTCGGAGCG TAAGAGAGAC 
GAGGCCGTTA CTCGGCTTGG TGCGGATGCC TTCTTGGTGA GCCGTGACCC 
GAAACAAATG AAGGATGCAA TGGGGACTAT GGATGGTATC ATTGATACCG 
TATCTGCGAC CCATCCACTT CTTCCGCTGC TTGGTTTGCT TAAAAATAAG 
GGAAAACTTG TTATGGTTGG TGCACCAGCA GAACCGCTCG AGCTTCCTGT 
TTTTCCTCTC ATCTTTGGGC GGAAGATGGT GGTGGGTAGT ATGGTAGGAG 
GTATAAAGGA GACGCAAGAG ATGGTGGATT TGGCTGGAAA ACACAACATC 
ACGGCGGATA TTGAGCTCAT CTCTGCGGAT TATGTCAACA CCGCCATGGA 
ACGGCTTGCA AAGGCTGACG TTAAGTACCG ATTTGTGATT GATGTTGCCA 
ACACGATGAA GCCAACTCCT TAACTAGAAA GCTTAAGAAT TGAATATCCC 
CAAAGCTTTT TTCATGTTTT TGCTTGTTTG TTTGATGTTG TTTGCTGGCG 
ACTTTGTGTG TAGTATTACC ACACTGCATG TACTTTATCA GTTGAATAAA 
CTTGAATATT GTATTTAATA AGCTATCTAC ATTAGATTTT GGGGAAGTTT 
GATTAAAATT TATTCCTAAA AAAAAAAAAA AAA

Gene models with high sequence identity

AT4G37980.1 [+] show detail - elicitor-activated gene 3-1
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	GroES-like	5.8e-48
superfamily	NAD(P)-binding domain	2.1e-42
PatternScan	Alcohol dehydrogenase, zinc-containing, conserved site	0
HMMPanther	ZINC-TYPE ALCOHOL DEHYDROGENASE-RELATED	3.9e-123
HMMPanther	Alcohol dehydrogenase superfamily, zinc-containing	3.9e-123
HMMPfam	Alcohol dehydrogenase GroES-like	2e-27
HMMPfam	Alcohol dehydrogenase, zinc-binding	7.4e-23
HMMSmart	Polyketide synthase, enoylreductase	5.4e-05
Gene3D	no description	3.3e-57

See the detailed result >

AT4G37980.1

Model type: Protein coding
Short Description: elicitor-activated gene 3-1
Computational Description: elicitor-activated gene 3-1 (ELI3-1); FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: response to bacterium, plant-type hypersensitive response; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Polyketide synthase, enoylreductase (InterPro:IPR020843), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: elicitor-activated gene 3-2 (TAIR:AT4G37990.1); Has 39128 Blast hits to 39104 proteins in 3053 species: Archae - 813; Bacteria - 26065; Metazoa - 1241; Fungi - 2911; Plants - 3099; Viruses - 3; Other Eukaryotes - 4996 (source: NCBI BLink).
Link: InterPro Scan - TAIR