F11042

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
T1	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11042

Determination of introduced cDNA(s)

RAFL07-12-F08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-12-F08 - Resource: pda09525

full reading [+] show sequence

AAAACCTTTT GCTCTTCCTT TTGATTAATT TAGTGTTTGA CAATCTCCTC 
CTCCTTCTCC TTCTTCTTCA AAGTTTTGTC GCAGTATCTA TTGTTCTTAC 
AGAGAGAAAG GAAAGCTTTA GTCTTTTACC AGTTTGATCC AATTCTGGGT 
TTCACTGAAA AAAAGTTGGG AGTTTGATTC TTCTAACTGT AGAAGAAACA 
GAGTCAACAG AAGAAAACTA AAAAAGTTGA GATTTTTCTC TCACGCGCTC 
AAGAACTTGA GTATGTCTTC TTCTGTAGCA GTGTTATGGG TTGCTACTTC 
TTCTCTAAAT CCAGACCCAA TGAACAATTG TGGGTTGGTA AGGGTTCTAG 
AATCTTCTAG ACTGTTCTCT CCTTGTCAGA ATCAGAGACT AAACAAAGGT 
AAGAAGAAGC AGATACCAAC TTGGAGTTCT TCTTTTGTAA GGAACCGAAG 
TAGAAGAATT GGTGTTGTGT CTTCAAGCTT AGTAGCAAGT CCTTCTGGAG 
AGATAGCTCT TTCATCTGAA GAGAAGGTTT ACAATGTTGT GTTGAAACAA 
GCTGCTTTGG TGAACAAACA GCTAAGGTCT TCTTCTTATG ACCTTGATGT 
GAAGAAACCA CAAGATGTTG TTCTTCCTGG GAGTTTGAGT TTGTTGGGTG 
AAGCTTATGA TCGATGCGGT GAAGTTTGCG CTGAATATGC TAAGACGTTT 
TATCTTGGAA CTTTGCTTAT GACACCCGAA AGGCGAAAGG CGATTTGGGC 
AATCTACGTT TGGTGTAGAA GAACTGATGA ACTTGTGGAT GGGCCAAATG 
CTTCACATAT AACTCCCATG GCTTTAGATA GATGGGAAGC AAGGTTAGAA 
GATCTTTTCC GTGGTCGTCC TTTCGATATG CTTGATGCTG CTCTCGCTGA 
TACAGTTGCT AGATACCCGG TCGATATTCA GCCATTTCGA GACATGATCG 
AAGGAATGAG AATGGACTTG AAGAAATCGA GATACCAGAA CTTCGATGAT 
CTATACCTTT ACTGCTACTA CGTCGCTGGA ACCGTCGGAT TGATGAGCGT 
TCCGGTTATG GGAATCGATC CTAAGTCGAA AGCAACAACC GAAAGTGTTT 
ACAACGCTGC CTTGGCCCTT GGTATAGCCA ATCAGCTTAC TAACATACTC 
AGAGACGTAG GCGAAGATGC GAGAAGAGGA AGGGTTTATC TGCCTCAGGA 
TGAATTGGCT CAGGCTGGTC TTTCAGATGA AGACATATTC GCCGGAAAAG 
TAACTGATAA ATGGAGAAAC TTCATGAAAA TGCAGCTTAA ACGAGCAAGA 
ATGTTCTTCG ACGAAGCTGA GAAAGGCGTC ACCGAGCTCA GTGCCGCTAG 
CAGATGGCCT GTATGGGCTT CATTGCTATT GTACAGGAGA ATACTGGACG 
AGATTGAAGC GAATGATTAC AACAATTTTA CTAAGAGAGC TTATGTGGGG 
AAAGTCAAGA AAATTGCAGC TTTGCCATTG GCTTATGCTA AATCAGTACT 
AAAGACTTCA AGTTCAAGAC TATCGATATG AGAGCGAGAG GAAAGTGGAA 
CAAAAACAAC CTAAGAGCGC TTTTTGTGAT TAAGAAAAAA CTTAGGCTCG 
AATTTATTAT GTTAACTAAT ATATACATAT TAATGGGGAA GCAAATTCTT 
ATAATGTTAC ATTATCTTTC TGAATGTAAA AAAGTATTTT TTTTTTTAAT 
TTTATTTTAG TTATAGTTCT CTTGGCCTAA TGAGGGGATA TACAATTTTT 
GGTTGAT

Gene models with high sequence identity

AT5G17230.1 [+] show detail - PHYTOENE SYNTHASE
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Squalene/phytoene synthase	1.3e-78
Gene3D	Terpenoid synthase	6.7e-82
superfamily	Terpenoid synthase	7.1e-97
PatternScan	Squalene/phytoene synthase, conserved site	0
PatternScan	Squalene/phytoene synthase, conserved site	0

See the detailed result >

AT5G17230.1

Model type: Protein coding
Short Description: PHYTOENE SYNTHASE
Curator Summary: Encodes phytoene synthase.
Computational Description: PHYTOENE SYNTHASE (PSY); FUNCTIONS IN: phytoene synthase activity, geranylgeranyl-diphosphate geranylgeranyltransferase activity; INVOLVED IN: carotenoid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Squalene/phytoene synthase, conserved site (InterPro:IPR019845), Terpenoid synthase (InterPro:IPR008949), Squalene/phytoene synthase (InterPro:IPR002060); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

RAFL03-01-D08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-01-D08 - Resource: pda00048

full reading [+] show sequence

AACAGCTTCA TCGTTTTATC TTCCAATCAA AGCAGCTCAA ATCAAGCTCG 
CAAAGATGAT GCACATGACC TTCTACTGGG GAATCAAAGC CACAATTCTC 
TTCGATTTCT GGAAAACTGA CTCATGGCTT AGTTACATCC TCACTTTAAT 
CGCTTGCTTC GTCTTCTCCG CTTTCTATCA ATACCTCGAG AATCGCCGCA 
TCCAATTCAA ATCCCTTTCT TCCTCCCGTC GTGCTCCTCC ACCGCCTCGC 
TCTTCCTCCG GCGTCTCCGC GCCTCTTATC CCTAAATCCG GTACCAGATC 
CGCCGCTAAA GCTGCTTCGG TTCTTCTTTT CGGCGTCAAC GCAGCGATCG 
GTTACTTGCT GATGCTTGCA GCTATGTCTT TCAACGGAGG TGTTTTCATC 
GCGATTGTCG TCGGATTAAC CGCCGGATAC GCTGTTTTTA GATCTGATGA 
CGGCGGTGCT GATACCGCCA CGGATGATCC ATGTCCATGT GCTTGATAAT 
GATTGATAAT AAAATCAAAA TCGGAAAAAT CTCAAAAAAG GTGTGTTTGA 
TAATTGATGT TTGTATTGTT GTTTGTTTCT GTATGATTAG TTGCTTTGTA 
ACAAAATAAT CCAATCTAAA TGTGTTTCTT GAGT

Gene models with high sequence identity

AT5G20650.1 [+] show detail - copper transporter 5
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	COPPER TRANSPORTER	1.5e-83
HMMPanther	Ctr copper transporter	1.5e-83
HMMPfam	Ctr copper transporter	4.9e-27

See the detailed result >

AT5G20650.1

Model type: Protein coding
Short Description: copper transporter 5
Curator Summary: encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast
Computational Description: copper transporter 5 (COPT5); FUNCTIONS IN: copper ion transmembrane transporter activity, high affinity copper ion transmembrane transporter activity; INVOLVED IN: copper ion transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ctr copper transporter (InterPro:IPR007274); BEST Arabidopsis thaliana protein match is: Ctr copper transporter family (TAIR:AT2G26975.1); Has 497 Blast hits to 497 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 217; Fungi - 69; Plants - 156; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
Link: InterPro Scan - TAIR