F11045

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11045

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11045

Determination of introduced cDNA(s)

RAFL05-02-F02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-02-F02 - Resource: pda00837

full reading [+] show sequence

ATTCAACACC AGCAAAATCC GCTTTGTTGC AGAGGATCAC AATCTAATGG 
CGATTCCAAT GTCCATGGCA ATGGCGACTC CTACAGATTC CGTGAGCAGA 
GTCTGGAGTA TGTCTTCTCT CAAATCAGCT CTTCCCTCCA CCGCATCACT 
CCGATTACCT TCCTCGTCTT CTCGCCGTCC GGTTACTCTT CGTCTCCCAA 
TCTCTTCTCC TTCACTCCCA TCTTTCTCCG GTCTCTCTCC GGTCAATCCT 
CTCCTCTCAA TCGGACTTCC AGATTGGCAA AGCTTTGAGA ATGGATTCAA 
AATTGTTGAC GGTGGTGGTC GTATCTACGC GATGAGACAC GGACGACGTG 
TTCCGAAGCT GAACAGACCA CCGGACCAGC GCAAAGCTCT TCTGCGAGGA 
CTCACGACTC AGCTTCTTAA GCATGGGAGA ATCAAGACGA CTCGAGCTAG 
AGCTAGTGCG ATGAGGAAGT TCGTTGACAA GATGATTACA TTGGCTAAAG 
ACGGTTCGTT GCACAAGCGA AGACAAGCCT TGGGATATAT CTACGAGAAA 
CAGATTGTTC ACGCTCTGTT TGCTGAGGTT CCTGATAGAT ACGGTGAGAG 
AAACGGTGGA TACACGAGGA TCATCAGAAC TCTTCCAAGG AGAGGTGATA 
ATGCTCCAAT GGCTTACATT GAGCTTGTCT AAGGTCAATA TCTCTTTTAT 
TTTGCTCAAT TGTTTCACTT TTGCTCTGTA ATATTGAAAA ACAGTTGTTG 
ATGCAGATAT GAGATCATTT TGTTTTGTGA GCTTCAATTG GC

Gene models with high sequence identity

AT3G54210.1 [+] show detail - Ribosomal protein L17 family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	Ribosomal protein L17	1.8e-60
superfamily	Ribosomal protein L17	1.3e-38
Gene3D	Ribosomal protein L17	1.5e-43
HAMAP	Ribosomal protein L17	26.201
HMMTigr	Ribosomal protein L17	2.8e-59
HMMPfam	Ribosomal protein L17	5.3e-36

See the detailed result >

AT3G54210.1

Model type: Protein coding
Short Description: Ribosomal protein L17 family protein
Computational Description: Ribosomal protein L17 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L17 (InterPro:IPR000456); BEST Arabidopsis thaliana protein match is: Ribosomal protein L17 family protein (TAIR:AT5G09770.1); Has 8019 Blast hits to 8019 proteins in 2737 species: Archae - 0; Bacteria - 5501; Metazoa - 121; Fungi - 128; Plants - 120; Viruses - 0; Other Eukaryotes - 2149 (source: NCBI BLink).
Link: InterPro Scan - TAIR

RAFL03-08-H14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-08-H14 - Resource: pda00018

full reading [+] show sequence

ATTTACAACT GTGGATAAGC CTTTTAGTCT GACTCAGCTT TCTCAAGATC 
CGAAAACACA CTGACCCAAC CCGGTTCGAT TTTGCTTAAC CGGACAAGAT 
ACATTAATCT GCCTAATCTT CAATTATTTA AAAGCTAACT AAACGTTATA 
CGTACTAATC ACTTCTTCCC CTATAAATAA ACCTTTCTAA TTTCTCATCT 
CAAATCACAC TGCATCACAA AACCCAAATC GGAACTTAAA CCAAAAGACA 
AACAAAAACG CCGTCGTTTC ACGATGCTTT CTTCTTCCCC AACCTTCTTC 
GCTACTCCAT TTCTCTCTTC TTCTTCTTCT TCTTCTCCGT CGTTCTCTTC 
TACTTCACCA CCGTCACGCA TTTCCCGGAT CTCGCCGTCG CTTTCTACAA 
CCACCGCGTC CTACACCTGC GCCGAAGATC TACCGAGATT ACGCCAAATC 
CCGCAGCGAT TTTCAGCAAC CGCGTCTCTC TACGAGATCC TTGAAATTCC 
CGTCGGCTCG ACGAGTCAAG AGATCAAATC AGCTTACCGG CGACTAGCCA 
GGATCTGTCA TCCCGATGTA GCGAGAAATA GTCGGGATAA CTCGTCGGCG 
GACGATTTCA TGAAGATCCA CGCAGCGTAT TGCACGCTTT CGGATCCCGA 
GAAACGCGCC GTTTATGATC GGAGGACTCT TCTTCGGAGC CGGCCGTTAA 
CGGCTGGATA CGGCAGTTAC GGTGGACGGA ATTGGGAAAC CGATCAGTGC 
TGGTAGCGAG TTGACTCGAT GTGTCGAGTT

Gene models with high sequence identity

AT2G17880.1 [+] show detail - Chaperone DnaJ-domain superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Heat shock protein DnaJ, N-terminal	17.132
superfamily	Heat shock protein DnaJ, N-terminal	2e-19
HMMSmart	Heat shock protein DnaJ, N-terminal	1.2e-17
Gene3D	Heat shock protein DnaJ, N-terminal	5.3e-16
HMMPanther	DNAJ-RELATED	1.4e-31
HMMPanther	Molecular chaperone, heat shock protein, Hsp40, DnaJ	1.4e-31
HMMPfam	Heat shock protein DnaJ, N-terminal	2e-20

See the detailed result >

AT2G17880.1

Model type: Protein coding
Short Description: Chaperone DnaJ-domain superfamily protein
Computational Description: Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT4G36040.1); Has 19677 Blast hits to 19677 proteins in 3133 species: Archae - 135; Bacteria - 8632; Metazoa - 3284; Fungi - 1660; Plants - 1836; Viruses - 5; Other Eukaryotes - 4125 (source: NCBI BLink).
Link: InterPro Scan - TAIR