F11050

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11050

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11050

Determination of introduced cDNA(s)

RAFL06-74-I02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-74-I02 - Resource: pda03502

full reading [+] show sequence

TGAAAGCGGT GAGTCATCTT ACCTTATAAA TGATCACAAA CCCGAGGACT 
GTGAGTTTTC GTGTAGAACA AATCCTTCTC TGAGAAAAAA CAACAGATCC 
GAATTTTATC TTTAATCAGC CGGAAAAAAT GGAGAAAGCG ATCGAGAGAC 
AACGCGTTCT TCTTGAGCAT CTCCGACCTT CTTCTTCTTC TTCGCACAAT 
TACGAGGCTT CTCTATCTGC TTCTGCTTGC TTGGCTGGGG ACAGTGCTGC 
ATATCAGAGG ACCTCTCTCT ATGGAGATGA TGTTGTCATT GTCGCGGCAC 
ATAGGACTCC ACTATGCAAG TCCAAACGTG GCAATTTCAA GGATACATAT 
CCCGATGATT TGCTCGCACC TGTTTTGAGG GCATTGATAG AGAAGACGAA 
TCTAAACCCA AGTGAAGTAG GTGACATTGT TGTGGGTACT GTTTTGGCAC 
CTGGATCTCA GAGAGCCAGT GAATGCAGGA TGGCTGCGTT CTATGCTGGT 
TTCCCTGAAA CCGTGGCTGT CAGAACTGTG AATAGACAGT GCTCATCTGG 
GCTTCAGGCT GTTGCTGATG TAGCCGCTGC CATTAAAGCG GGATTTTATG 
ACATTGGTAT CGGGGCTGGT TTGGAGTCCA TGACTACCAA TCCAATGGCA 
TGGGAAGGGT CAGTCAACCC AGCGGTGAAG AAGTTTGCAC AAGCGCAGAA 
TTGTCTTCTT CCTATGGGTG TTACGTCAGA AAATGTAGCA CAACGCTTTG 
GTGTCTCAAG GCAGGAGCAA GATCAAGCTG CTGTTGACTC GCACAGAAAG 
GCAGCTGCTG CTACTGCTGC TGGTAAATTC AAGGATGAGA TCATTCCTGT 
TAAGACCAAG CTTGTTGACC CGAAGACTGG TGATGAGAAA CCCATTACAG 
TTTCTGTTGA TGATGGTATC CGACCAACCA CAACTCTTGC TTCTCTTGGG 
AAGCTGAAGC CAGTGTTTAA GAAGGATGGC ACCACTACTG CTGGAAATTC 
CAGCCAAGTA AGTGATGGTG CAGGAGCGGT TCTCCTAATG AAGAGAAGTG 
TTGCAATGCA AAAAGGACTT CCCGTTCTTG GTGTATTCAG GACATTTGCT 
GCAGTTGGTG TTGACCCTGC AATCATGGGT ATCGGTCCAG CAGTTGCCAT 
TCCTGCTGCA GTTAAGGCGG CTGGTTTAGA ACTTGATGAC ATCGACTTGT 
TTGAGATCAA TGAGGCATTT GCATCTCAGT TTGTTTATTG CCGTAACAAA 
TTGGGACTTG ACCCAGAGAA AATCAATGTC AACGGAGGTG CAATGGCCAT 
AGGCCATCCT TTGGGCGCTA CAGGAGCGCG TTGTGTTGCT ACATTGTTGC 
ACGAGATGAA ACGCCGTGGT AAAGACTGCC GTTTTGGAGT AGTGTCAATG 
TGCATTGGGA CGGGGATGGG TGCAGCAGCT GTGTTTGAGA GAGGAGATGG 
AGTTGATGAG CTTCGCAACG CAAGGAAAGT TGAAGCGCAA GGTCTTTTGT 
CCAAGGACGC TCGCTAGAGA GGACCATGCA CCAAAACCGT TTTTCACCTC 
ACCTCTCTCT TTTCTGGTCT TCTTGTCACT TTCTTCAGAT ATTATTATAG 
TTTCGAATAA AGCACACAAC CAATGTTTGC CTGAGTCTTG TGTTGTTCTT 
GACCAGGTCA TGTGTTTAGT ATTTTTTTTA AGTGAAGGGG GATAATCTTT 
AAATCTTTTA TATGTAAGAA TATTGTTCTT CTCGAATTTC ATCAGTTGTT 
GCC

Gene models with high sequence identity

AT2G33150.1 [+] show detail - peroxisomal 3-ketoacyl-CoA thiolase 3
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Thiolase, N-terminal	2.3e-83
HMMPfam	Thiolase, C-terminal	1.1e-48
Gene3D	Thiolase-like, subgroup	7.7e-63
HMMTigr	Thiolase	3.1e-204
PatternScan	Thiolase, acyl-enzyme intermediate active site	0
PatternScan	Thiolase, active site	0
PatternScan	Thiolase, conserved site	0
superfamily	Thiolase-like	6.8e-71
superfamily	Thiolase-like	3.1e-40
HMMPanther	3-KETOACYL-COA THIOLASE B (BETA- KETOTHIOLASE	1.1e-226
HMMPanther	Thiolase	1.1e-226

See the detailed result >

AT2G33150.1

Model type: Protein coding
Short Description: peroxisomal 3-ketoacyl-CoA thiolase 3
Curator Summary: Encodes an organellar (peroxisome, glyoxysome) 3-ketoacyl-CoA thiolase, involved in fatty acid b-oxidation during germination and subsequent seedling growth. Mutants have defects in glyoxysomal fatty acid beta-oxidation. EC2.3.1.16 thiolase.
Computational Description: peroxisomal 3-ketoacyl-CoA thiolase 3 (PKT3); FUNCTIONS IN: acetyl-CoA C-acyltransferase activity; INVOLVED IN: fatty acid beta-oxidation, jasmonic acid biosynthetic process, response to wounding, fatty acid oxidation, glyoxysome organization; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase (InterPro:IPR002155), Thiolase, active site (InterPro:IPR020610), Thiolase, N-terminal (InterPro:IPR020616), Thiolase, conserved site (InterPro:IPR020613), Thiolase, C-terminal (InterPro:IPR020617), Thiolase-like, subgroup (InterPro:IPR016038), Thiolase-like (InterPro:IPR016039), Thiolase, acyl-enzyme intermediate active site (InterPro:IPR020615); BEST Arabidopsis thaliana protein match is: peroxisomal 3-ketoacyl-CoA thiolase 4 (TAIR:AT1G04710.1); Has 22382 Blast hits to 22371 proteins in 2261 species: Archae - 414; Bacteria - 14116; Metazoa - 985; Fungi - 655; Plants - 282; Viruses - 0; Other Eukaryotes - 5930 (source: NCBI BLink).
Link: InterPro Scan - TAIR

RAFL06-82-F02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-82-F02 - Resource: pda03825

full reading [+] show sequence

GTTTGGAGAT AAGAAGTGGG AACTTGAATG GCTTCCTTAT CCACTTCCGT 
TGTAGCTTCG GCTTCGTCGC GTTTATGGAA TCCTGCTGCC TCCAACGGCA 
AGATTTGCGT TCCTTCTGCT TCGCTTTCTC TGCGTACGGG TTGTAGACGG 
AGTTCGTCCT CTCTCACTTC TTCCGCTTCT TCGCAATTGC TTCATTGCTC 
GTTTCTCTCG TCGCCTGTTT CCCTAGCGTC TCCATTTTCT GGTTTGTCCA 
TTGCGTTTGA TCTCAGCAGT CAAACTAGTG GACTGAATGG CCAGAGACGC 
AGAGGCCTTG TGGTTAGAGC TGGAAAAGCT GCTCTGTGTC AAACTAAGAG 
AAGCAGATCA AGAAAATCTC TAGCTAGGAC TCATGGTTTC CGTAGAAGGA 
TGAGGACCAC TAGCGGTAGA GCAACCATAA AGCGTCGACG TGCCAAGGGA 
CGTTGGAACC TCTGTCCCAA GTCCAACCCT AGCAGCGGCA AACGGGCTTG 
AAGTTTGTTT CTCTCTTCAC TCTATCTGTA ATCTTGTTTC ATGTGCTTTT 
TTTCCACCAG AAGATACAAT GAGAAACATG GTTCGTTGAG CTCTTTTCTG 
CGTTTTAACT CTCTTGCATC CTTGATTCGT TTATAAATCA ATGTTCTTGG 
AATCCAAAAA AAAAAAAAAA A

Gene models with high sequence identity

AT1G29070.1 [+] show detail - Ribosomal protein L34
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Ribosomal protein L34	2.5e-10
HMMTigr	Ribosomal protein L34	0.00220000021756082
BlastProDom	Ribosomal protein L34	0

See the detailed result >

AT1G29070.1

Model type: Protein coding
Short Description: Ribosomal protein L34
Computational Description: Ribosomal protein L34; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34 (InterPro:IPR000271); Has 615 Blast hits to 615 proteins in 261 species: Archae - 0; Bacteria - 556; Metazoa - 0; Fungi - 11; Plants - 33; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link: InterPro Scan - TAIR