F11051

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11051

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11051

Determination of introduced cDNA(s)

RAFL05-16-E22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-E22 - Resource: pda17098

full reading [+] show sequence

CCTGGTGCGC TCTCATATTT CTCACATTTT CGTAGCCGCA AGACTCCTTT 
CAGATTCTTA CTTGCAGCTA TGGGTAAAGA GAAGTTTCAC ATTAACATTG 
TGGTCATTGG TCATGTTGAT TCTGGAAAAT CGACCACAAC TGGTCACTTG 
ATCTATAAGC TTGGTGGTAT TGACAAGCGT GTCATCGAGA GGTTCGAGAA 
GGAGGCTGCT GAGATGAACA AGAGGTCCTT CAAGTACGCA TGGGTGTTGG 
ACAAACTTAA GGCCGAGCGT GAGCGTGGTA TTACCATCGA TATTGCTCTA 
TGGAAGTTCG AGACCACCAA GTACTACTGC ACAGTCATTG ATGCCCCAGG 
ACATCGTGAT TTCATCAAGA ACATGATTAC TGGTACCTCC CAGGCTGATT 
GTGCTGTTCT TATCATTGAC TCCACCACTG GAGGTTTTGA GGCTGGTATC 
TCTAAGGATG GTCAGACCCG TGAGCACGCT CTTCTTGCTT TCACCCTTGG 
TGTCAAGCAG ATGATTTGCT GTTGTAACAA GATGGATGCC ACCACCCCCA 
AATACTCCAA GGCTAGGTAC GATGAAATCA TCAAGGAGGT GTCTTCATAC 
CTGAAGAAGG TCGGATACAA CCCTGACAAA ATCCCATTTG TGCCAATCTC 
TGGATTCGAG GGAGACAACA TGATTGAGAG GTCAACCAAC CTTGACTGGT 
ACAAGGGACC AACTCTTCTT GAGGCTCTTG ACCAGATCAA CGAGCCCAAG 
AGGCCATCAG ACAAGCCCCT TCGTCTTCCA CTTCAGGATG TCTACAAGAT 
TGGTGGTATT GGAACGGTGC CAGTGGGACG TGTTGAGACT GGTATGATCA 
AGCCTGGTAT GGTTGTTACC TTTGCTCCCA CAGGGTTGAC CACTGAGGTT 
AAGTCTGTTG AGATGCACCA CGAGTCTCTT CTTGAGGCAC TTCCCGGTGA 
CAATGTTGGA TTCAATGTCA AGAATGTTGC TGTCAAGGAT CTTAAGAGAG 
GATACGTTGC CTCTAACTCC AAGGATGATC CAGCTAAGGG TGCCGCCAAC 
TTCACCTCCC AGGTCATCAT CATGAACCAC CCTGGTCAGA TTGGTAACGG 
TTACGCCCCA GTTCTCGATT GCCACACCTC TCACATTGCA GTCAAGTTCT 
CTGAGATCTT GACCAAGATT GACAGGCGTT CTGGTAAGGA GATTGAGAAG 
GAGCCCAAGT TTTTGAAGAA TGGTGACGCT GGTATGGTTA AGATGACCCC 
AACCAAGCCC ATGGTTGTTG AGACTTTCTC CGAGTACCCA CCTTTGGGAC 
GTTTCGCTGT TAGGGACATG AGGCAGACCG TTGCTGTTGG TGTTATTAAG 
AGCGTGGACA AGAAGGACCC AACTGGAGCC AAGGTCACCA AGGCTGCAGT 
GAAGAAGGGT GCCAAATGAT GAGACTTTCG TTATGATCGA CTCTCTTATG 
GTTTTCTTTG GTTCTTAAAA CTTTGATGGC GTTTGAGCCT TTTTCTTTTT 
TCTCTTTATT TCTGTGACTT TCTCTCTCCC TCCTTTTTGG ATATCTCTGA 
GACTTTTTAT TATGGTTTTC AATTATGCAG TTTCCGGATA ATTTTGCTTC 
AAAAAAAAAA

Gene models with high sequence identity

AT5G60390.1 [+] show detail - GTP binding Elongation factor Tu family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
FPrintScan	Protein synthesis factor, GTP-binding	1.8e-23
FPrintScan	Protein synthesis factor, GTP-binding	1.8e-23
FPrintScan	Protein synthesis factor, GTP-binding	1.8e-23
FPrintScan	Protein synthesis factor, GTP-binding	1.8e-23
FPrintScan	Protein synthesis factor, GTP-binding	1.8e-23
HMMPfam	Protein synthesis factor, GTP-binding	2.5e-55
HMMPfam	Translation elongation factor EFTu/EF1A, C-terminal	1.6e-32
HMMPfam	Translation elongation factor EFTu/EF1A, domain 2	6.9e-16
HMMPanther	ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA)	0
HMMPanther	TRANSLATION FACTOR	0
BlastProDom	Q46515_DESMO_Q46515;	2e-06
superfamily	P-loop containing nucleoside triphosphate hyd	2.6e-84
superfamily	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	2.4e-41
superfamily	Translation elongation/initiation factor/Ribosomal, beta-barrel	1.6e-32
PatternScan	Protein synthesis factor, GTP-binding	0
HMMTigr	Translation elongation factor EF1A, eukaryotic/archaeal	7.4e-292
Gene3D	no description	8.1e-58
Gene3D	no description	9.6e-31
Gene3D	no description	3.5e-45

See the detailed result >

AT5G60390.1

Model type: Protein coding
Short Description: GTP binding Elongation factor Tu family protein
Computational Description: GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, nucleus, plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seed development stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT1G07940.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

RAFL09-33-L03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-33-L03 - Resource: pda06010

full reading [+] show sequence

GAGAAAAAAC AGCAAAGAAA ATCAGAGAGA TCAAAAAAAA GAAAAAAAAG 
AACAGAGATT CTTTTGAACT AACGAAGACA TATCGTTTCT CTAAAGTAGA 
ATCTTTGGTA TTCGGAAAAA TGTCGTTTCT GAGTATTGTT CGTGATGTTA 
GAGATACTGT AGGAAGCTTT TCGAGACGTA GTTTCGACGT GAGAGTATCT 
AATGGGACGA CTCATCAGAG GAGTAAATCT CACGGTGTTG AGGCACATAT 
TGAAGATCTT ATTGTAATCA AGAACACTCG TTGGGCTAAT TTACCGGCTG 
CGCTATTACG AGATGTGATG AAAAAGTTGG ATGAAAGCGA GAGTACTTGG 
CCTGCACGTA AACAAGTCGT TGCTTGTGCT GGTGTCTGCA AGACATGGAG 
ACTAATGTGC AAAGATATTG TGAAAAGTCC TGAGTTCTCA GGCAAACTCA 
CATTTCCAGT TTCGTTGAAA CAGCCCGGGC CTAGGGATGG AATCATACAA 
TGTTATATCA AAAGAGACAA GTCTAACATG ACTTACCACC TTTACCTTTC 
TCTTAGTCCT GCCATACTTG TTGAAAGTGG GAAGTTTCTT CTCTCGGCAA 
AGCGCTCACG GAGAGCTACA TACACAGAGT ATGTAATATC AATGGATGCA 
GACAACATTT CAAGATCAAG CAGCACTTAC ATTGGCAAAC TGAAGTCTAA 
CTTTCTAGGG ACAAAATTTA TAGTATATGA TACGGCTCCT GCGTACAACA 
GTAGCCAGAT ATTGTCCCCA CCAAACCGGA GTCGTAGTTT CAACTCCAAG 
AAAGTGTCTC CCAAAGTCCC TTCTGGAAGT TACAACATTG CTCAAGTTAC 
ATACGAGCTG AACTTGCTTG GAACCCGTGG ACCTCGTAGA ATGAACTGCA 
TTATGCACTC TATCCCCTCC TTAGCTCTAG AACCCGGAGG TACTGTCCCT 
AGCCAACCTG AGTTTCTACA ACGTTCCCTT GATGAATCTT TCCGCAGCAT 
CGGTTCCTCA AAGATAGTCA ACCACTCGGG AGATTTCACC CGACCGAAAG 
AGGAAGAAGG AAAGGTGCGA CCTTTGGTAC TGAAAACTAA ACCGCCAAGG 
TGGCTCCAAC CGTTGCGATG TTGGTGCCTT AACTTCAAAG GGAGAGTGAC 
TGTAGCTTCT GTCAAGAACT TCCAGTTGAT GTCCGCTGCA ACGGTTCAGC 
CCGGTAGTGG TAGTGATGGT GGAGCATTGG CTACGAGGCC ATCGTTATCA 
CCACAGCAGC CAGAGCAATC AAACCATGAT AAGATAATAC TACACTTTGG 
GAAAGTGGGT AAGGATATGT TCACTATGGA CTATCGTTAT CCTCTCTCTG 
CCTTTCAAGC GTTTGCCATT TCCCTGAGCA CCTTTGATAC TAAATTGGCA 
TGTGAATAAA AGTAGAAAGA TCATAAGAGG GACTTAAAAC TAATAGGAAC 
CGTTTACGAT ATGCGAGGGT TTGTTTGTTT TTGTTTATCT GTCTGATCTG 
GTGTGTTAGT GAATGTGAAC TTTTGTGGTT GTTTATCTTC GAAAAGAAAA 
AATAAGTGTT GGTGACC

Gene models with high sequence identity

AT1G43640.1 [+] show detail - tubby like protein 5
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
PatternScan	Tubby, C-terminal, conserved site	0
FPrintScan	Tubby, C-terminal	2.8e-73
FPrintScan	Tubby, C-terminal	2.8e-73
FPrintScan	Tubby, C-terminal	2.8e-73
FPrintScan	Tubby, C-terminal	2.8e-73
FPrintScan	Tubby, C-terminal	2.8e-73
FPrintScan	Tubby, C-terminal	2.8e-73
FPrintScan	Tubby, C-terminal	2.8e-73
superfamily	Tubby, C-terminal	9.1e-99
Gene3D	Tubby, C-terminal	4.9e-95
HMMPfam	Tubby, C-terminal	2.8e-105
HMMPfam	F-box domain, cyclin-like	5.9e-08
HMMPanther	TUBBY-LIKE PROTEIN 2	3.3e-182
HMMPanther	TUBBY-RELATED	3.3e-182

See the detailed result >

AT1G43640.1

Model type: Protein coding
Short Description: tubby like protein 5
Curator Summary: Member of TLP family
Computational Description: tubby like protein 5 (TLP5); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 1 (TAIR:AT1G76900.2); Has 930 Blast hits to 929 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 348; Fungi - 19; Plants - 462; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).
Link: InterPro Scan - TAIR