F12435

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	epinastic (PATO:0000945) (Cauline leaf::Shape::epinastic) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12435

Determination of introduced cDNA(s)

RAFL09-27-O19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-27-O19 - Resource: pda08142

full reading [+] show sequence

AAAAAAGCAG AGCTCACACT TAGAAAACAA AAAACAAAAA TGGCTACGCT 
TTCGTTTGGA ATCGCCGCCG CTGCAACCAC CGTCCGTACG ATTCCGAGAT 
TTAATTCACG GAGGAGCAAA ATCACATGCG AATGGGATCC GAAAGGTGTG 
TTGGGTCCGG CTCAAACTGG TCATATAGCT CGGCTTGAGT TTAAGCGTCG 
GCTAGAGAGA GATTCAGAGG CAAGAGAAGC TTTTCAGAAA CAACTTCGTG 
AAGAGAAAGA GCGTCGTCAA GCTCTTAGAC AATCTAGAGT TGTACCGGAT 
ACTGCTGCGG AGCTGATTGA GTACTTTCTT GATACTGAAG CTCAGGAGAT 
TGAGTATGAG ATCGCTAGGC TTAGAGGAAG GTTAAACGAC GAATTCTTTG 
CGCAGATACG ACTTGAAATC GGACAGATTC GATTTGCTGT TACTAAGACT 
GCGGATATTG AAGATAGATT GATTGAGCTT GAAACACTTC AAAAAGCTTT 
AGAAGAAGGA ATAGAGGCTT ATGACAAAAT GCAAAATGAG CTTATGACGG 
CTACAAATAG CTTAACCAAA CTCTTAACCT CAACCGATAT AAAAACCACA 
TTGTTGGATA TGGTGGAGAA AAACCAAATC AACAGATCTT TGTTGGCACT 
TCTCGACGAA AACATAGCCA ATGCATACAA AGGAAACCAG AAAGAAGCAG 
GAGATTACAT GGAGAAGATA CGCTCTTCAG TTCTTAAGTA TTTGACAGTG 
TAGGATCATA TGAGTCTTCG AAAGATTTCT CAAGCTTTTG AATGTTTTCT 
ATTATCGGGG AAAATTGTAT TTATATTTTT GTTTGTTGAG TAAAATGTAT 
TTTCTTTTTT TCCGAACGAT GTTTATATTT TTAGGGTCAT TTCAGATCTT 
CAAGTAATAA AAAGAATTTA AT

Gene models with high sequence identity

AT1G62780.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
Coil	coiled-coil	0

See the detailed result >

AT1G62780.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 94 Blast hits to 94 proteins in 35 species: Archae - 6; Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link: InterPro Scan - TAIR

RAFL05-20-N19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-20-N19 - Resource: pda02805

full reading [+] show sequence

GAATCTCTCT TTCTTCTTCT TTTTCTCTCG CTCCAAATTC CATGTCTGTG 
TCTCTTTCCT CCTCCGCCGT ATAATTCGCC GGAAAAATTA TCTCCCTTTG 
ATTTTCGAAC ACCTCCGCGA ACTATGCGCT TCTTTTGCCC TTATCCTCCA 
ACTACTTGTC GGATCTGCAA TTCTTCTTGT CAATTCCCAA CCCTAATCGG 
AGCTAATCAC ACCTCTGCTC GTTTCTCTTC TCGTTAGTCT CTGCTCCATC 
TCCTCCTCAG ATTTAGGGAT ATTTGCTTCC AATTTAACAA ACAAACCAAG 
AGCTATTCTT TCGTTCTTTA TTCTCTCCGT CTTGTAAAGT AGTTTTAGCA 
GTGAGATACA TACAAATGGA GACTTCCATG GGGAAACCCA GCTTCTTACG 
GAATATAATG GTTCGCGTGC TTCTCTTTGG TGTTCTTATC ATCGTTGTGA 
GATTTGCTTA TGTTGTCACC ATCACCGGTG AATCATGCAA TCGCGGCGAC 
TTCTGCTTCT TCTCTCTCCC TGAGAATCTC AACTTTGTCA TCTCCGGTGC 
TGCCTCCGGC TCTTCTGCTA TCGACGCCAT CAGATCTACT TCCCCTGGGG 
ATGATCTCTA CACCACCAGG GATTGGATCA AATCCGTTCA GTTTTACTCC 
TCCATCTTCC AGGATCTGAT CGCCGACGGT TATCTATCGC CTGAATCGAA 
GACGCTTTGT GTAGAGACGG CGATTGGACA AGAGGTTCAC TCGCTCAGAG 
AGATTGGGGT GAAGAACTCC GTCGGGATCT CTAAGAAAGC TTCTAGGCCG 
TTGGTGGTTA GAGGCGAGGG ACATGCTATT CCCTTTGAGG ATAACGCTTT 
CGATTTTGTA TTCTCCGGTG GTGACCGCCT TGGGAAGTCG TTGAAGCAGT 
TGGAATTCGC CGATGAGATT ACTCGAACAC TGAAACCCGA AGGGTTTGCG 
GTGGTTCATG TTGGGGCTAC AGATACGTAC AGTTTCAATT CATTCCTTGA 
TTTGTTTAAT TCTTGCAGAT TGGTGAAGAT GCGTGATATC GATGGTTTTG 
ATCCTTCGAT GCCTCATATC AGAGAATTTG TTATTCAGAA ATACTCAGAG 
ATTGATGGTG GTGGTCATCA CCACCGTGGT GGTGGTGATT CTGGTGGAAA 
GTGCTGGATT CCGGGTTACA AAAGAGATTT GATTCGGGAT GCAGAGCCAC 
TGATTCAAGA GGAGCCTCTT AAGCCATGGA TTACACTTAA GAGGAACATC 
AAGAATATTA AATATGTGCC TTCTATGGTT GATATACGTT TCAAGAGTAG 
ATACGTTTAC GTTGATGTTG GTGCTAGAAG TTATGGATCC AGTATTGGGA 
GTTGGTTCAA GAAAGAGTAC CCTAAGCAGA ACAAAACTTT TGATGTTTTC 
GCCATTGAGG CTGACAAAGC CTTTCACGAA GAGTATAAGA TAAAGAAGAA 
GGTGAACCTG TTGCCATACG CAGCGTGGGT GAGGAACGAG ACGTTATCGT 
TTGAGATCAA TCACGATCCG GGAAAGGAAG TGGAAGCCAA AGCAAAGGGC 
AGGGGGATGG GCAGAATCCA GCCGGTTAAA AAGTCTGACT CGAGTGACTT 
AGCTGGAGAG GTGAATTTGA TTCAAGGGTT TGATTTCGCT GACTGGTTGA 
AGAAGAGTGT GAGAGAGAGG GACTTTGTTG TGATGAAGAT GGATGTTGAA 
GGAACCGAAT TCGATCTGAT CCCGAGGCTA ATCAAGACAG GAGCGATTTG 
TCTAATAGAT GAGTTGTTCC TTGAATGCCA TTACAACAGG TGGCAGAGAT 
GTTGTCCTGG TCAAAGGAGC CAAAAGTACA ACAAGACTTA TAACCAATGC 
TTAGAGCTCT TCAATTCGCT CAGACAAAGA GGGGTGCTTG TCCATCAATG 
GTGGTAATGG TTAGGATGCT GCATAAAAGT CTCCTTCTTC TATGCATTTG 
GTGAAAAATG TACTTTCTTC TTCTAGAATA TATAAAGCGG GATATTGTAG 
GTTTCTATTA AAAATACGTT GTCTGTGCTG AAATTCCCTT TTACTGTAAG 
AAAAAAGAAG TTTAGCTTTA AATGGAAATT TGAGTTTCTT TTACGCTTAA 
AAAAAAAAAA AAAA

Gene models with high sequence identity

AT5G01712.1 [+] show detail - conserved peptide upstream open reading frame 48
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Methyltransferase type 11	6.4e-05
HMMTigr	Methyltransferase FkbM	2.8e-05

See the detailed result >

AT5G01712.1

Model type: Protein coding
Short Description: conserved peptide upstream open reading frame 48
Curator Summary: Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF48 represents a conserved upstream opening reading frame relative to major ORF AT5G01710.1
Computational Description: conserved peptide upstream open reading frame 48 (CPuORF48); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR