F12435

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12435

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12435

Determination of introduced cDNA(s)

  • RAFL09-27-O19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-27-O19 - Resource: pda08142

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-27-O19 - full reading
    AAAAAAGCAG AGCTCACACT TAGAAAACAA AAAACAAAAA TGGCTACGCT 
    TTCGTTTGGA ATCGCCGCCG CTGCAACCAC CGTCCGTACG ATTCCGAGAT
    TTAATTCACG GAGGAGCAAA ATCACATGCG AATGGGATCC GAAAGGTGTG
    TTGGGTCCGG CTCAAACTGG TCATATAGCT CGGCTTGAGT TTAAGCGTCG
    GCTAGAGAGA GATTCAGAGG CAAGAGAAGC TTTTCAGAAA CAACTTCGTG
    AAGAGAAAGA GCGTCGTCAA GCTCTTAGAC AATCTAGAGT TGTACCGGAT
    ACTGCTGCGG AGCTGATTGA GTACTTTCTT GATACTGAAG CTCAGGAGAT
    TGAGTATGAG ATCGCTAGGC TTAGAGGAAG GTTAAACGAC GAATTCTTTG
    CGCAGATACG ACTTGAAATC GGACAGATTC GATTTGCTGT TACTAAGACT
    GCGGATATTG AAGATAGATT GATTGAGCTT GAAACACTTC AAAAAGCTTT
    AGAAGAAGGA ATAGAGGCTT ATGACAAAAT GCAAAATGAG CTTATGACGG
    CTACAAATAG CTTAACCAAA CTCTTAACCT CAACCGATAT AAAAACCACA
    TTGTTGGATA TGGTGGAGAA AAACCAAATC AACAGATCTT TGTTGGCACT
    TCTCGACGAA AACATAGCCA ATGCATACAA AGGAAACCAG AAAGAAGCAG
    GAGATTACAT GGAGAAGATA CGCTCTTCAG TTCTTAAGTA TTTGACAGTG
    TAGGATCATA TGAGTCTTCG AAAGATTTCT CAAGCTTTTG AATGTTTTCT
    ATTATCGGGG AAAATTGTAT TTATATTTTT GTTTGTTGAG TAAAATGTAT
    TTTCTTTTTT TCCGAACGAT GTTTATATTT TTAGGGTCAT TTCAGATCTT
    CAAGTAATAA AAAGAATTTA AT

    Gene models with high sequence identity

    1. AT1G62780.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT1G62780.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 94 Blast hits to 94 proteins in 35 species: Archae - 6; Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • RAFL05-20-N19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-20-N19 - Resource: pda02805

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-20-N19 - full reading
    GAATCTCTCT TTCTTCTTCT TTTTCTCTCG CTCCAAATTC CATGTCTGTG 
    TCTCTTTCCT CCTCCGCCGT ATAATTCGCC GGAAAAATTA TCTCCCTTTG
    ATTTTCGAAC ACCTCCGCGA ACTATGCGCT TCTTTTGCCC TTATCCTCCA
    ACTACTTGTC GGATCTGCAA TTCTTCTTGT CAATTCCCAA CCCTAATCGG
    AGCTAATCAC ACCTCTGCTC GTTTCTCTTC TCGTTAGTCT CTGCTCCATC
    TCCTCCTCAG ATTTAGGGAT ATTTGCTTCC AATTTAACAA ACAAACCAAG
    AGCTATTCTT TCGTTCTTTA TTCTCTCCGT CTTGTAAAGT AGTTTTAGCA
    GTGAGATACA TACAAATGGA GACTTCCATG GGGAAACCCA GCTTCTTACG
    GAATATAATG GTTCGCGTGC TTCTCTTTGG TGTTCTTATC ATCGTTGTGA
    GATTTGCTTA TGTTGTCACC ATCACCGGTG AATCATGCAA TCGCGGCGAC
    TTCTGCTTCT TCTCTCTCCC TGAGAATCTC AACTTTGTCA TCTCCGGTGC
    TGCCTCCGGC TCTTCTGCTA TCGACGCCAT CAGATCTACT TCCCCTGGGG
    ATGATCTCTA CACCACCAGG GATTGGATCA AATCCGTTCA GTTTTACTCC
    TCCATCTTCC AGGATCTGAT CGCCGACGGT TATCTATCGC CTGAATCGAA
    GACGCTTTGT GTAGAGACGG CGATTGGACA AGAGGTTCAC TCGCTCAGAG
    AGATTGGGGT GAAGAACTCC GTCGGGATCT CTAAGAAAGC TTCTAGGCCG
    TTGGTGGTTA GAGGCGAGGG ACATGCTATT CCCTTTGAGG ATAACGCTTT
    CGATTTTGTA TTCTCCGGTG GTGACCGCCT TGGGAAGTCG TTGAAGCAGT
    TGGAATTCGC CGATGAGATT ACTCGAACAC TGAAACCCGA AGGGTTTGCG
    GTGGTTCATG TTGGGGCTAC AGATACGTAC AGTTTCAATT CATTCCTTGA
    TTTGTTTAAT TCTTGCAGAT TGGTGAAGAT GCGTGATATC GATGGTTTTG
    ATCCTTCGAT GCCTCATATC AGAGAATTTG TTATTCAGAA ATACTCAGAG
    ATTGATGGTG GTGGTCATCA CCACCGTGGT GGTGGTGATT CTGGTGGAAA
    GTGCTGGATT CCGGGTTACA AAAGAGATTT GATTCGGGAT GCAGAGCCAC
    TGATTCAAGA GGAGCCTCTT AAGCCATGGA TTACACTTAA GAGGAACATC
    AAGAATATTA AATATGTGCC TTCTATGGTT GATATACGTT TCAAGAGTAG
    ATACGTTTAC GTTGATGTTG GTGCTAGAAG TTATGGATCC AGTATTGGGA
    GTTGGTTCAA GAAAGAGTAC CCTAAGCAGA ACAAAACTTT TGATGTTTTC
    GCCATTGAGG CTGACAAAGC CTTTCACGAA GAGTATAAGA TAAAGAAGAA
    GGTGAACCTG TTGCCATACG CAGCGTGGGT GAGGAACGAG ACGTTATCGT
    TTGAGATCAA TCACGATCCG GGAAAGGAAG TGGAAGCCAA AGCAAAGGGC
    AGGGGGATGG GCAGAATCCA GCCGGTTAAA AAGTCTGACT CGAGTGACTT
    AGCTGGAGAG GTGAATTTGA TTCAAGGGTT TGATTTCGCT GACTGGTTGA
    AGAAGAGTGT GAGAGAGAGG GACTTTGTTG TGATGAAGAT GGATGTTGAA
    GGAACCGAAT TCGATCTGAT CCCGAGGCTA ATCAAGACAG GAGCGATTTG
    TCTAATAGAT GAGTTGTTCC TTGAATGCCA TTACAACAGG TGGCAGAGAT
    GTTGTCCTGG TCAAAGGAGC CAAAAGTACA ACAAGACTTA TAACCAATGC
    TTAGAGCTCT TCAATTCGCT CAGACAAAGA GGGGTGCTTG TCCATCAATG
    GTGGTAATGG TTAGGATGCT GCATAAAAGT CTCCTTCTTC TATGCATTTG
    GTGAAAAATG TACTTTCTTC TTCTAGAATA TATAAAGCGG GATATTGTAG
    GTTTCTATTA AAAATACGTT GTCTGTGCTG AAATTCCCTT TTACTGTAAG
    AAAAAAGAAG TTTAGCTTTA AATGGAAATT TGAGTTTCTT TTACGCTTAA
    AAAAAAAAAA AAAA

    Gene models with high sequence identity

    1. AT5G01712.1 [+] show detail - conserved peptide upstream open reading frame 48
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Methyltransferase type 11 0.000064
    HMMTigr Methyltransferase FkbM 0.000028

    See the detailed result >

    AT5G01712.1

    Model type
    Protein coding
    Short Description
    conserved peptide upstream open reading frame 48
    Curator Summary
    Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF48 represents a conserved upstream opening reading frame relative to major ORF AT5G01710.1
    Computational Description
    conserved peptide upstream open reading frame 48 (CPuORF48); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR